| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0922 |
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| Symbol | arnT |
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| ID | 5613260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1102180 |
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| End bp | 1103820 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931770 |
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| Product | 4-amino-4-deoxy-L-arabinose transferase |
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| Protein accession | YP_001472661 |
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| Protein GI | 157374061 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.248037 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATAAGT CAAAAATTAA TCTAGCGGTC ATTGTACCGC TTTTTTTTAT AATGCTTTAT
CTGCTACCAC TCGGATTGCG TGATCTCTGG TCACCGGATG AATTAAGGTA TGCAGAAATA
GCCCGTGAGA TGGTGGATAG TGGTAACTGG ATAGTACCGA CATTCAATGA CATAAGGTAC
TTTGAGAAAC CTGTGATGGG CCACTGGATG AATGCCATCT CTCAGGTGCT CTTCGGTGAG
AATAACTTTT CGGTACGCGC CGCCTCGGCT TTCAGCACTC TTGGGGCTGC GTTTTGTTTG
TTCCTGCTCG TCGGCCGCTT CGCTAACCGA AAGCAGGCCT GGGTCACCGT ATCTGTATTT
CTCAGCCTCT TCTTAGTCTC CAATTTAGGC ACATACAGTG TTCTGGATGG CATGCTAAAC
CTCTGGCTCA CCGCCGCATT TACCGCATTT TTCTATGCCG CGGATTCACC GACAACCTCA
CAGCGATGCC GCTTCTACGG CCTGGCCGGA CTCTTTTGTG CCTGCGCACT GCTCACCAAA
GGTTTTCTGG CATTAGCCCT GCCCGTGATT GTCGTTGTAC CGTTTATGAT CTGGCAGCGA
CAGCTGGTCG ATATATTACG TTGGGGTTGG TGGGTGATGT TGGTCGCCCT TATCGTCACT
CTCCCCTGGG CCTTGGCAAT ACACGCCGCT GAGCCCGATT ACTGGCATTA CTTCTTCTGG
GTTGAACATA TTCAACGCTT CGCCGCCGAG GATGCCCAAC ATACCTCTCC CGCCTGGTAT
TATCTGCCTT ACCTGCTGCT CGGGACTCTG CCATGGTTAT TTCTGGCTCC GAGTGCGATT
AAACATCTCA AAGGCCACTG GCAATCCCCT CTGCTGAGAT ATGCACTGCT TTGGGCGCTG
ATCCCCTTTA TTTTCTTCTC GGCTGCAAAG GGCAAGCTGG TCACCTATAT CTTGCCATGT
ATGGCACCTT TGGCGATTAT CTTGGCTCAG GGCATCATCA GCGCCTTTGA GAACAGAGCG
AAAGGACTGA AAATAGGTTC TGTCATCAAC TGTGCCTTCT TTAGCTTGAT ATCTGTTGCC
GTCATTGTCC TCTTCTATAT GGGACGTTTG CCTCTGGAAG CCGAAGAGTT CTACCGCCCC
TGGTTATTGG TGGTGGTCTG TGGCAGCTGG GCGGTGCTGG CTTACATATC AATTAAGGCC
AAGAGCTTAG AGGGAAAAAT AGCCAGCTAT ATGTTGATGC CACTCAGCCT CTTCTTGCTG
GCTTGGGCCA TAATTCCCAA CATCAGTATC GACTCTAAGA TGCCCGGTCG TTTTTTGGAG
CAGGTCAGCC CTTTAGTCAG TGATGATGCC ATACTGATTG CTGACTACCC GAGTACCATG
TCTGCATTTA ACTGGTACTT TAAACGTCGC GATGTCTACC TGACAGGCAA CACCGGTGAG
GTCAGCTATG GTATCGGCTA CGATGACGCC AAGCACAAGT ATGTCGCCCC ATCGCTACTC
GGCGAATTTA TCCGGAAACA GAGTGTCCCC GTGGTTATCC TGTTCAGAGA GATGGATGTG
CCACAAAGCC TACCTGAGCC TGATAAACGT ATAGAGAGAG GCAAGTTCAC CCTGGTCTAT
TACGATCGAG TAAAGCGCTA A
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| Protein sequence | MDKSKINLAV IVPLFFIMLY LLPLGLRDLW SPDELRYAEI AREMVDSGNW IVPTFNDIRY
FEKPVMGHWM NAISQVLFGE NNFSVRAASA FSTLGAAFCL FLLVGRFANR KQAWVTVSVF
LSLFLVSNLG TYSVLDGMLN LWLTAAFTAF FYAADSPTTS QRCRFYGLAG LFCACALLTK
GFLALALPVI VVVPFMIWQR QLVDILRWGW WVMLVALIVT LPWALAIHAA EPDYWHYFFW
VEHIQRFAAE DAQHTSPAWY YLPYLLLGTL PWLFLAPSAI KHLKGHWQSP LLRYALLWAL
IPFIFFSAAK GKLVTYILPC MAPLAIILAQ GIISAFENRA KGLKIGSVIN CAFFSLISVA
VIVLFYMGRL PLEAEEFYRP WLLVVVCGSW AVLAYISIKA KSLEGKIASY MLMPLSLFLL
AWAIIPNISI DSKMPGRFLE QVSPLVSDDA ILIADYPSTM SAFNWYFKRR DVYLTGNTGE
VSYGIGYDDA KHKYVAPSLL GEFIRKQSVP VVILFREMDV PQSLPEPDKR IERGKFTLVY
YDRVKR
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