| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0859 |
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| Symbol | |
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| ID | 5613421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1023825 |
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| End bp | 1025192 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931707 |
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| Product | L-serine ammonia-lyase |
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| Protein accession | YP_001472598 |
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| Protein GI | 157373998 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGCG CATTTGATAT TTTTAAGATA GGTGTGGGTC CATCGAGTTC ACACACTGTC
GGGCCGATGA AGGCCGCCAA AGAGTTTGTC GATGAGTTAC GTCAACGCGG TGAGTTGAAA
CAGATCACTC GCGTGAGTGT CGATATCTAT GGTTCACTCT CCCTGACGGG CAAGGGACAC
CATACCGATA CCGCCATCTT AGTCGGCTTG GGAGGTAACC TTCCCGAGAG TGTCGATATC
GAGTCTATTC CAGAATATAT ACGTCAGATT GAGCTGACTT CAACCTTACC TTTAGGTGAA
GAAGCCCTCA ATGTCGCATT TCCACAAGGT TCAGTTACAT TCCATGAACA TGCGCTTCCA
TTGCATGAAA ATGGTATGTC ACTGCACGCC TGGATTGGGG ATACTTGTGC ATTTAGTAAG
ACTTACTATT CGACGGGTGG TGGCTTTATT GTCGATGAAG AGCATTTCGG ACTGGCTGCG
GCTAATGAAG TGATCCTTCC CTACCCATTT GCCTATGCGT CAGAGCTGCT TGAGACCTGT
AAGCGTGAAG GGCTCAGTAT TAGCGCGCTG ATGATGGAAA ATGAGAAGGT TTTCCACAGC
GAAGCGGCCA TCTATGAAGG CTTTGGTGCC GTTTGGGATA CCATGAAAGC GGGTATCGAA
AGAGGTTGTC AGACTGAGGG GGTGCTTGCC GGTCCTTTGA GAGTCCCACG CCGAGCGCCT
GCACTTTATC GTCAACTGGT TACTGGTGAG CGCCTCTCTT CAGATCCTAT GGTTATTATC
GACTGGGTTA ATATGTTTGC CCTTGCGGTC AGTGAAGAAA ATGCCGCTGG CGGTCGTGTT
GTGACCTCTC CAACCAACGG CGCTGCGGGT ATCATTCCTG CGGTAATGGC GTATTACGAT
AAGTTTATTC AGCCTATGGG CAAGCAAGAG TATACGCGCT TCTATCTTGC CGCTTCTGCA
GTCGGTTCGC TCTATAAGCG TAACGCTTCG ATTTCCGGTG CCGAAGTGGG CTGCCAGGGA
GAAGTTGGTG TTGCTTGTTC GATGGCGGCC GCTGGTTTAG CTGAGATCAT GGGGGCTAGC
CCTTCTCAGG TGTGTATCGC AGCAGAAATC GGTATGGAGC ATAACTTGGG CTTAACCTGT
GACCCGGTAG CCGGCCAGGT GCAGGTACCT TGTATCGAGC GTAATGCGAT AGCATCTGTT
AAGGCTATCA ACTCATCTCG CATGGCTATG CGCCGTAACA GTGAGCCCAC AGTGAGCCTG
GATAAGGTGA TCGAAACCAT GTACGAGACG GGGAAGGATA TGCATGTTAA GTATCGTGAA
ACCAGTCAAG GTGGTTTAGC GATAAAGGTC ACCAGCATCT GTGCTTAA
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| Protein sequence | MFSAFDIFKI GVGPSSSHTV GPMKAAKEFV DELRQRGELK QITRVSVDIY GSLSLTGKGH
HTDTAILVGL GGNLPESVDI ESIPEYIRQI ELTSTLPLGE EALNVAFPQG SVTFHEHALP
LHENGMSLHA WIGDTCAFSK TYYSTGGGFI VDEEHFGLAA ANEVILPYPF AYASELLETC
KREGLSISAL MMENEKVFHS EAAIYEGFGA VWDTMKAGIE RGCQTEGVLA GPLRVPRRAP
ALYRQLVTGE RLSSDPMVII DWVNMFALAV SEENAAGGRV VTSPTNGAAG IIPAVMAYYD
KFIQPMGKQE YTRFYLAASA VGSLYKRNAS ISGAEVGCQG EVGVACSMAA AGLAEIMGAS
PSQVCIAAEI GMEHNLGLTC DPVAGQVQVP CIERNAIASV KAINSSRMAM RRNSEPTVSL
DKVIETMYET GKDMHVKYRE TSQGGLAIKV TSICA
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