| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0849 |
|---|
| Symbol | |
|---|
| ID | 5613284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1012611 |
|---|
| End bp | 1013843 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640931697 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472588 |
|---|
| Protein GI | 157373988 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4637] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTAT CGGCCTCAAG CAAACTCAAT CTCAGAGATA ACTCACCACC TATGCTCACC
ACTTTAGCCA TTCAAAATTA CCGCTCTTTA CGTGAGATAA GAGTGCCTCT TAAACAACTC
AATCTCGTCA CGGGGGCTAA TGGTAGCGGT AAGTCAAATC TCTATAAAGC GCTGCGTTTA
CTCGCACAAA CAGCCCAGGG CGGAGTAGTT AATGCCCTGG CGTTGGAAGG TGGGCTGGAT
TCCAGCTTCT GGGCCGGGCC AGAAAATGTG ACTAAAGGAA TGCTCGATGG CACTACCGCT
ATCGAACCCA CCGTTCGTCA ACAAGCTAAA CGCCTCAAAC TGGGGTTTGC CGGCGATGAA
TACAGTTACC TTATCGAGCT AGGGCTTCCT AAGCCTGACT CGACAACCCT GTTTGGTTTA
GATCCCCAGA TAAAACGTGA GTCTATCTGG GTCGGTAATA AGTATCGTCC AGCCTCTGTA
CTGGTTGAAC GCCGGGGAGC TTTGGTGAAA AACAGGGCCG AAAATAGCGG TCAAGCGGGC
TGGCAGGTGT TAAATTTACA TATGCAGCAC GGTGACAGCA TCTTCACCGA GCTTGCCGAT
CCCGAGCGTA CGCCGGAGGT CATCAAGCTT AGAGATAACA TCAGAGCCTG GCGCTTCTAC
GATCACTTTC GAAGCGATAG TGATGCGCCG GCACGTAAGC CTCGACTCGG CACTCGCACA
CCGGTATTGC ATCACGATGG CAGGGATCTG GCTTCGGCTA TTCAAACGAT ATTTGAGGTG
GGTGACAGAG CAGGATTCGA TGAGGCGGTT AGCGATGCCT TCCCCGGCGC CAGAGTGCAT
ATCGAATATG AATCTAACGG CATGTTAAAC GTGCGATTTA ATCAAGAGGG GCTGTTACGC
CCGCTCAATG CGGCTGAGCT CTCCGACGGG ACACTCAGGT ACCTGCAGCT CGTCGCTGCC
CTGTTAACGC CCAGGCCACC CGAGCTGATG GTGCTCAATG AACCGGAAAC CAGTTTACAC
CCGGATCTGT TACCCGCACT ATCTCGTCTG ATAGCCAAGG CATCACAACA GTGTCAACTA
TGGGTCGTCT CTCACGCCAA CCGTTTGATC AACGCCCTCA ATGAATTCGA ACACTGCAAT
CTGATTGAAC TGGATAAGCA GCTGGGGCAG ACGGAGATAG TCGGTCAGGA TATTTTAAGC
AAGCCCAGCT GGAACTGGCA GAGCCGCACT TAA
|
|---|
| Protein sequence | MSLSASSKLN LRDNSPPMLT TLAIQNYRSL REIRVPLKQL NLVTGANGSG KSNLYKALRL
LAQTAQGGVV NALALEGGLD SSFWAGPENV TKGMLDGTTA IEPTVRQQAK RLKLGFAGDE
YSYLIELGLP KPDSTTLFGL DPQIKRESIW VGNKYRPASV LVERRGALVK NRAENSGQAG
WQVLNLHMQH GDSIFTELAD PERTPEVIKL RDNIRAWRFY DHFRSDSDAP ARKPRLGTRT
PVLHHDGRDL ASAIQTIFEV GDRAGFDEAV SDAFPGARVH IEYESNGMLN VRFNQEGLLR
PLNAAELSDG TLRYLQLVAA LLTPRPPELM VLNEPETSLH PDLLPALSRL IAKASQQCQL
WVVSHANRLI NALNEFEHCN LIELDKQLGQ TEIVGQDILS KPSWNWQSRT
|
|---|
| |