Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0847 |
Symbol | |
ID | 5613201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1009951 |
End bp | 1011867 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640931695 |
Product | peptidase U32 |
Protein accession | YP_001472586 |
Protein GI | 157373986 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0826] Collagenase and related proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAAG CTGCCATCTT TACCCCCGAT GATATCTCGC ATATATCGAA CCGATTAGAA CTGCTTGCCC CGGCTAAAAA TGCCGAATTT GGTATGGAAG CGATTCTTCA TGGTGCCGAT GCGGTCTATA TCGGTGGCCC TGATTTTGGC GCTCGTGCAA CGGCGGGCAA TAGCGTGGAA GATATCGCCA GGCTGTGCAG TTTTGCCCAT AAATACCATG CTCAGGTGTT TGTCGCCCTC AATACCATCT TGATGGATGA TGAGCTGGCC GATGCTGAAA AGTTGATCTG GCAGCTCTAT GAAGCCGGCG CCGATGCCCT CATCGTACAG GATATGGGGG TACTGCAGCT CGACCTTCCT CCTATCGCGT TGCATGCCAG CACCCAGATG GATAACCGCA CCGCCGAAAA AGCGGTTTTT CTTGAGCAGG TTGGTTTCTC TCAGGTCGTA CTGGCTCGCG AACTGGGGCT GAGTCAGATA CGCGAAGTGG CCGCTCATAC CAAGATGCAA CTCGAGTTCT TCATTCATGG AGCCCTGTGT GTGGCTTACA GTGGTCTGTG TAACTTAAGT CATGCATTCA GTAATCGCAG CGCTAACCGA GGTGAATGCT CACAGATGTG TCGTCTTCCG GGCGAGCTTA AGACCCGTCA GGGCGAGGTA CTTGCCGAAA ATGAGCATCT GCTATCGCTA AAGGATAATA ATCAGACCGA TAACCTTGAA GCCTTGATCG ATGCCGGTGT GCGCTCATTT AAAATTGAAG GCCGACTCAA AGATATCAAC TATGTGAAAA ACGTGACCGC CCATTACAGG CAGGAGTTGG ACAAGATCAT CGCCCGACGT CCGGAATTGA AAGCCTCATC ACATGGGCGC AGCGTGCATA ACTTCACTCC AAATCCGGAG AAGACCTTTA ACCGTGGACG AACGGATTAC TTTGTTCATG AGCGCAGTCA GGGGGTCAGT GATTTTCGCT CACCAAAATA TATCGGTGAA GAGGTCGCCA CCGTTAAGGC CTTAGGCAAA GATTACATCG AGGTTAACTC TACCCATAGT TTTAATAATG GTGATGGCTT ATGTTACTTC CCCGCCAACT ATGCCAGTGC CAAGCAGTCC GATGATAAGC TGAGAGGGTT ACGACTCAAT CGCGCCGAAG GTAATAAACT GCATGTATTG GCTGTGCCAG GCGATCTTGA AGTGGGTATG ACTATCTATC GTAACCGAGA TCAGGCTTTC GAGGCGGTGT TAGCCAAAGA GTCATCGAAG CGCTCTATCG AAGTCGATAT TAAGCTGACA GACACCGCAG ATGGCATCAT GCTGACAATG ACAGATATCT ATGGTCATCA GGGCGTGGTG ACTCTGGCTT TAGATAAACA GGCTGCCAAT GAACCAGAAA GCGCTGGAGC AAAGCTACGT AAACAGTTAG GAAAACTTGG CAGTACCGAT TTTGTTGCCC GTGAGATCAC TGTCGAGACT GAGCAAGTTT GGTTTGCGCC TGCCTCGGTG ATTAACGGAC TTCGCCGTGA TGCGGTAGCG GCGCTCGAGC AAGCACGAGT CGATGAGTAT CAAAGGCCAC AGCCTTGGAA GCATAATCAA AACGCCATGT ATCCGACCAA GCACCTTAGT TACCTGGCTA ATGTGGCCAA TCAAAAATCG AAAGATTTCT ATCAGCAGCA TGGTGTGATT GAGATTGAGG ATACCTATGA GAAGAACGGT ATCACCGAAG AGGTCCCATT GATGGTGACT AAACACTGCT TGCGCTTCAA CTTCAACCTC TGTCCAAAAG AGGTGCCTGG CATAAAGGCT GATCCTATGG TACTTGAGAT AGGTAAAGAT GTATTAAAGC TGGTTTTCGA CTGCCCTAAG TGTGAAATGA TGGTGGTCGG CGCCAATCGC CAGGTGAAGA GCGACGGCAG AGGCTAG
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Protein sequence | MSKAAIFTPD DISHISNRLE LLAPAKNAEF GMEAILHGAD AVYIGGPDFG ARATAGNSVE DIARLCSFAH KYHAQVFVAL NTILMDDELA DAEKLIWQLY EAGADALIVQ DMGVLQLDLP PIALHASTQM DNRTAEKAVF LEQVGFSQVV LARELGLSQI REVAAHTKMQ LEFFIHGALC VAYSGLCNLS HAFSNRSANR GECSQMCRLP GELKTRQGEV LAENEHLLSL KDNNQTDNLE ALIDAGVRSF KIEGRLKDIN YVKNVTAHYR QELDKIIARR PELKASSHGR SVHNFTPNPE KTFNRGRTDY FVHERSQGVS DFRSPKYIGE EVATVKALGK DYIEVNSTHS FNNGDGLCYF PANYASAKQS DDKLRGLRLN RAEGNKLHVL AVPGDLEVGM TIYRNRDQAF EAVLAKESSK RSIEVDIKLT DTADGIMLTM TDIYGHQGVV TLALDKQAAN EPESAGAKLR KQLGKLGSTD FVAREITVET EQVWFAPASV INGLRRDAVA ALEQARVDEY QRPQPWKHNQ NAMYPTKHLS YLANVANQKS KDFYQQHGVI EIEDTYEKNG ITEEVPLMVT KHCLRFNFNL CPKEVPGIKA DPMVLEIGKD VLKLVFDCPK CEMMVVGANR QVKSDGRG
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