| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0800 |
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| Symbol | |
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| ID | 5611527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 949131 |
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| End bp | 950009 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640931648 |
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| Product | HflC protein |
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| Protein accession | YP_001472539 |
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| Protein GI | 157373939 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00875081 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00773647 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTAGAT TAACTGCGAT TATTGCTGCG GTACTTGTTG CTGTGTTTCT GTCATCTATT
TTGATTGTTA ACGAAGGTGA GAGAGCGATT GTTTCACGAT TCGGTAAGAT TTTAAAAGAT
GATGGCGTGA CTCGCATCTA TGAACCTGGT CTGCACCTCA AGTTGCCTAT GATCGATAAG
ATTAAGTTCC TTGACTCGCG TATCCAGACG ATGGATGGTG CTGCTGATAG ATTTGTCACC
TCTGAGAAGA AAGACCTTAT GGTTGATTCT TATGTGAAGT GGCGAATTCT TGATCACGAA
AAGTATTATC TGTCGACTAA TGGCGGTATT AAAGCCAATG CCGAGTCTCT ACTTCAGCGT
AAGATCAATA ACGACCTTCG TACCGAGTTT GGTCGCCGTA CGATCAAAGA GATCGTTTCC
GGAAGCCGTG ACGAGTTACA ACAAGATGCA CTGAAGAACG CATCTGAAAG TGCTGCGGAT
CTGGGTATTG AAGTCGTCGA TGTTCGTGTG AAACAGATCA ACTTGCCTGC AAACGTAAGT
TCGAGTATCT ATCAGCGTAT GCGTGCCGAA CGTACCGCTG TAGCGAAAGA GCATAGAGCA
CAAGGTATGG AGCAGTCAGA GATCATTCGT GCTAAAACGG ATGCTTCTGT GACTATTCAG
ATTGCCGATG CACAACGTAA AGCATTGGAA GTTCGAGGTG AAGGTGATGC TACGGCAGCT
AAAGTTTACG CCGATGCTTA CAATAAGGAT CCTGAGTTTT ATAGCTTTAT ACGAAGCCTT
GAAGCTTACA AAGAAAGTTT CAGTGGTGAT TCGAATGTTA TGGTGTTAGA GCCTGATAGC
GAATTCTTCA AATATATGAA GAGCTCTCAA GGTAAATAA
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| Protein sequence | MGRLTAIIAA VLVAVFLSSI LIVNEGERAI VSRFGKILKD DGVTRIYEPG LHLKLPMIDK
IKFLDSRIQT MDGAADRFVT SEKKDLMVDS YVKWRILDHE KYYLSTNGGI KANAESLLQR
KINNDLRTEF GRRTIKEIVS GSRDELQQDA LKNASESAAD LGIEVVDVRV KQINLPANVS
SSIYQRMRAE RTAVAKEHRA QGMEQSEIIR AKTDASVTIQ IADAQRKALE VRGEGDATAA
KVYADAYNKD PEFYSFIRSL EAYKESFSGD SNVMVLEPDS EFFKYMKSSQ GK
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