Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0731 |
Symbol | |
ID | 5611674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 874646 |
End bp | 875623 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931575 |
Product | arabinose-5-phosphate isomerase |
Protein accession | YP_001472470 |
Protein GI | 157373870 |
COG category | [M] Cell wall/membrane/envelope biogenesis [T] Signal transduction mechanisms |
COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
TIGRFAM ID | [TIGR00393] KpsF/GutQ family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.338058 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAGATG AAACTCAATT ACGCCAATGG GGCAGAAATG TTATCGATAT CGAAAGAAAT GCTCTCGATA ATCTATACCA ATATGTAGAT TCTGCAGAGT TTGCCACGGC GTGTCGGTTA ATCCTCGAAT GTACCGGTAA GGTCATCGTC ATGGGGATGG GCAAATCCGG ACATATAGGT AATAAGATTT CGGCAACCTT AGCCAGTACT GGCACCCCCG CATTCTTCGT GCACCCCGGT GAAGCCAGCC ATGGCGATCT TGGCGTTCTG AGTGAAAATG ATATCATCTT AGCTATCTCC AACTCAGGTG AAGCCAGTGA AATTCTCACC TTGATGCCGG TGATCAAGCG AATGGGACTT CCAATCATCG CCGTTACGGG TAAGCCCGAA TCGAATATGG CAAAGCTGTC TATCGTACAC CTGTGTATCG AAGTACCGGA AGAGGCTTGT CCTCTGGGGC TTGCGCCGAC CTCCAGCACG ACTGCCACAT TAGTTATGGG GGATGCTCTA GCCGTCGCAC TGCTACAGGC CAGAGGGTTT ACCAAGGATG ATTTTGCCTT GTCACACCCA GGCGGTAGCT TAGGCCGAAA ATTACTGCTA AAAGTCAGCG ATGTTATGCA TAAAGCTTCC GAGCTCCCTC TGGTCAGCCA TAATATCTGT ATCACAGATG CGCTATATGA GATCTCAAAG AAAGGGCTGG GAATGACAGC CGTCGTCGAT GATGATAATA AACTCGTCGG TATCTTTACC GATGGCGATC TGCGCAGGGT TATCGACGCA GAAGTCAATC TGAGAAAGAC CTCGATAAGT GATGCCATGA GCAGAGGCTG CGTGACAGTT TCCGATGATA TTTTGGCAGC CGAAGCATTG AAAGTGATGG AAGAGAAAGA CATTAACGGC CTGATTGTCA TCGATGAACA GCAACAGCCA ATCGGTGCAT TGAACATGCT GGATATGGTA AAAGCGGGAG TGATCTAG
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Protein sequence | MVDETQLRQW GRNVIDIERN ALDNLYQYVD SAEFATACRL ILECTGKVIV MGMGKSGHIG NKISATLAST GTPAFFVHPG EASHGDLGVL SENDIILAIS NSGEASEILT LMPVIKRMGL PIIAVTGKPE SNMAKLSIVH LCIEVPEEAC PLGLAPTSST TATLVMGDAL AVALLQARGF TKDDFALSHP GGSLGRKLLL KVSDVMHKAS ELPLVSHNIC ITDALYEISK KGLGMTAVVD DDNKLVGIFT DGDLRRVIDA EVNLRKTSIS DAMSRGCVTV SDDILAAEAL KVMEEKDING LIVIDEQQQP IGALNMLDMV KAGVI
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