| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0706 |
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| Symbol | |
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| ID | 5612071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 850989 |
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| End bp | 851918 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931550 |
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| Product | transporter DMT superfamily protein |
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| Protein accession | YP_001472445 |
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| Protein GI | 157373845 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.010497 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00122154 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACTCCA GTGACGCCAG TAAGATACGC TCATCTGTTC AGGGGAACTC CCTTGCGGCT
TTCTCCTTTA TCTTATGGGG ACTAATGCCA CTTTATTATC AATACCTGCC CGGTGCCGAT
ATCAATGAGA TGCTGGCATT TAGAATTCTA TGTTCTGTCC CCTTCATGGC ATTAGTCTTC
CTATTGCTAC GCCGGAAAAT GCCTTCGATA AAGCTTGTGA TGTCCGACAA GCGCTCCCTC
GCCCTGTGCG GATTGGCCAC GCTTATCATG TGCGTCTCTT GGTATAGTTT CACCTGGGCC
ATCACCCACG GTCAGGTATT AGCGGCGAGT TTAGGCTTCT TTATCAATCC CCTCTTTGCC
ATAGGGTTAG GCGTTGTATT TCTCAAAGAT AAGCTCACTT CGGCTCAGAA AGCCGCCGTC
ATGCTCGGAA CTGCCGGTAT CGGCTATATG GTATTTAGCT ATGGAGAGCT GCCTTGGCTG
GCACTTAGCA TGGGGGGATT TTTCGCACTC TATGGGCTAT GTAAGAAATT TATCCGTTTC
GACTCACTGA CATCGGTGAC TGTAGAAGCC ATGCTTTTAA TGCCATTTGC TGCACTCTAC
ATTATTTGGT TATGGGTATC GGATCAGAGC GTGGCACTGG GCGGTGAGCT ATCTCAGTTG
CTGCTTTATA TGGGGACGGC GCCAGTCACC CTATTGCCGC TTATCTTCTT CGCCCTGGCT
ATCAGCCGTA CCAGCCTGTC TATGATAGGT CTGATGCAAT ATATCGAACC CAGCATGCAC
TTCTTACTAG CCGTGCTCCT GTTTAATGAA CACTTCGATC AGGTAAAAGC GGTCAGCTTC
GCGTTAATCT GGACGGGGTT ACTTCTCTGC TCTCTGGAGG CTTTACCCGC CTTGAAGCAG
CGAATATTTA CTCAAAGACG CCATAGTTAA
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| Protein sequence | MHSSDASKIR SSVQGNSLAA FSFILWGLMP LYYQYLPGAD INEMLAFRIL CSVPFMALVF
LLLRRKMPSI KLVMSDKRSL ALCGLATLIM CVSWYSFTWA ITHGQVLAAS LGFFINPLFA
IGLGVVFLKD KLTSAQKAAV MLGTAGIGYM VFSYGELPWL ALSMGGFFAL YGLCKKFIRF
DSLTSVTVEA MLLMPFAALY IIWLWVSDQS VALGGELSQL LLYMGTAPVT LLPLIFFALA
ISRTSLSMIG LMQYIEPSMH FLLAVLLFNE HFDQVKAVSF ALIWTGLLLC SLEALPALKQ
RIFTQRRHS
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