| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0670 |
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| Symbol | |
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| ID | 5612941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 810677 |
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| End bp | 811615 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931514 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472409 |
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| Protein GI | 157373809 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAT TTTCGGATAT GGAGATGTTT GCAAGTATTG TTAAGCATCA GGGCTTAGCG
GCCGCGGGGC GAGAGTTAGG TTTATCGCCT GCAACTATGA CGGCGAGGTT GCAAGCGTTA
GAAGAGAGGT ATGGCATAAA GCTACTTAAT CGCAGTACCC GGCATATCTC ACTGACTGAC
TCAGGTGACC TCTATCATAA AGCCTGTTTG GAGATATTAG ACAGTGTCAG GGGAACTGAA
AATCTGCTAC AGAAGGGTGT GAAAGAGGTT AAGGGCAGCT TGAAAATATC AGCCCCTAAA
GATGTCGGTA AGCAGTATAT TTTGCCGATA CTTTCAGAGT TCGTTGAGCG CTACCCTGAG
GTCACTCCCT ATCTCTATCT GAATGATCAT CTCTCAAATA TTGCTGAATC AGGTATTGAT
GTCGTTATTC GTTATGGCGA ACTGGCCGAT AGTAATCTTA TTTTAAGGCG GTTAGCGTCG
AGTCGCCGTG TATTGTGCGC CTCGCCAGAA TACTTAGTTA AAAAAGGCAC GCCGCTAACA
CCACAAGATC TTGCCGGACA TGATTGCTTA GCAATGATTC GCAGTCATGA AGAGCTTAAA
ACCTGGCACT TTCAACTCAA TGAACAGCGT AAATCGGTAA CTGTTGTTCC TAAACGATTT
TCTGACGACG GTGAAGTCAT AAGGCGTTGG GCGTTAGAAG GGGCAGGTAT TGCGCTTAAA
TCTCTAATCG ATGTACAAGT GGATATTAAT GAGCGGCGTC TAGTCACTGT GTTGAATGGA
TATATGAAAA ACTTCGATAC ATCGACATCG ATGTCGAGTA CCAACCTTAA TGTGGTTTAT
ATGAGTCGCC AGTATCAACC TAAGCGGATT CGATTGTTTT TAGACTTCTT GTTCGAAAAG
TTTGAAACTG AGCTGAATAT CCCAAAAGCC AGGGGGTAG
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| Protein sequence | MDKFSDMEMF ASIVKHQGLA AAGRELGLSP ATMTARLQAL EERYGIKLLN RSTRHISLTD
SGDLYHKACL EILDSVRGTE NLLQKGVKEV KGSLKISAPK DVGKQYILPI LSEFVERYPE
VTPYLYLNDH LSNIAESGID VVIRYGELAD SNLILRRLAS SRRVLCASPE YLVKKGTPLT
PQDLAGHDCL AMIRSHEELK TWHFQLNEQR KSVTVVPKRF SDDGEVIRRW ALEGAGIALK
SLIDVQVDIN ERRLVTVLNG YMKNFDTSTS MSSTNLNVVY MSRQYQPKRI RLFLDFLFEK
FETELNIPKA RG
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