| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0585 |
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| Symbol | |
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| ID | 5609968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 713851 |
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| End bp | 714966 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931430 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_001472325 |
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| Protein GI | 157373725 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
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| TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000556211 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTTTAG CTAACAGCCT GCTTAACAGT TTGCGAAGAA TAAAGGCCAT TACGACCAAA
GAGATTAGAC AACTGATGAG AGACAGGATC ACCTTCGGTA TGGTGGTGAT GATCCCTCTC
ATTCAACTGC TTCTCTTTGG CTATGCGATC AACACAGATG TCAGAAATGT GCCTGTCGCG
ATCGTCGATC AGAGTAACTC GGCGCTCGGA CGTTGGATAG TCGAGGCCAT TAAGGTCACA
CAGGTTGTCT CCATAGAGAG CCATTATACA ACCGCCAGAG AAGCGGAAGA TGCCATTACC
CGCGGAGAGA TACGTGCCGC CCTCATTCTT CCACCAAACC TGACCGAGAA GTTAGCCAAT
AAGGAGACCT TAGGCCAATG GCTGGTCGAT GGCTCAGATA CCATGATCGC CGGTGCGATT
AAACAGCTGC GCCATATGCC ACTGGATCAG ATAACGGGCA TAAAAACAGA GGTCCCGCCG
ACATTCGAGG TCGCCCTCTT CTACAATCCC GAGCAACGCT CTGCCGTCAA TATTGTACCG
GGATTGATCG CGGTGATCTT GACCATGACC ATGATTCTGT TCACCTCGGC GGCCATCGTC
AGAGAGCGAG AGAGAGGAAA CCTGGAGCTA TTGATCACTA CCCCTATCAA GCCATTAGAG
CTAATGCTGG GCAAGATATT TCCCTATATC ATTGTCGGCC TTATTCAGAT GACGATCATT
CTGGGACTGG GTAATATCAT CTTCGATGTC CCCCTCAATG GCGATATCGC TCAACTGCTT
ATGGGCACCC TGCTGTTTAT CGCCGCAAGC CTCACCTTAG GCCTTATCAT CTCGACCATA
GCCAAGTCAC AACTTCAGGC GATGCAGATG ACCATCTTCA TCATACTGCC AACCATACTC
CTATCGGGCT TTATGTTCCC CTTCGAGGCC ATGCCCAAAC CGGCTCAATG GATCGCCGAA
ATACTGCCCG CGACCCACTT TATGCGGATC ATCCGCGCCG TAGTGCTTAG AGGAGGCGAG
ATAAGTGATA TGCGCTTCGA TGCGCTCTGG CTTGTCGGTT TCACGGTTAT AGGCATCATC
ATCGCCTCGA TGAGGTTCAA TAAACGCCTC GATTAA
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| Protein sequence | MFLANSLLNS LRRIKAITTK EIRQLMRDRI TFGMVVMIPL IQLLLFGYAI NTDVRNVPVA
IVDQSNSALG RWIVEAIKVT QVVSIESHYT TAREAEDAIT RGEIRAALIL PPNLTEKLAN
KETLGQWLVD GSDTMIAGAI KQLRHMPLDQ ITGIKTEVPP TFEVALFYNP EQRSAVNIVP
GLIAVILTMT MILFTSAAIV RERERGNLEL LITTPIKPLE LMLGKIFPYI IVGLIQMTII
LGLGNIIFDV PLNGDIAQLL MGTLLFIAAS LTLGLIISTI AKSQLQAMQM TIFIILPTIL
LSGFMFPFEA MPKPAQWIAE ILPATHFMRI IRAVVLRGGE ISDMRFDALW LVGFTVIGII
IASMRFNKRL D
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