| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0584 |
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| Symbol | |
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| ID | 5609967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 712221 |
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| End bp | 713600 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640931429 |
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| Product | amino acid carrier protein |
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| Protein accession | YP_001472324 |
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| Protein GI | 157373724 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1115] Na+/alanine symporter |
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| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000603825 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAGGAA TTACTGAATT TGTAAGTATG ATCAATGGCT TCGTTTGGGG TACCCCCATG
CTGGTCATGA TCTTGGGTGT GGGTCTGTTC CTCTCGGTTG GCTTGAAGTT GATGCCAATC
CTGAAGCTGG GAACCGGCTT TAAACTGCTC TGGTCGGGTA GGATCCCCGA TAAAGATAAG
ACCATGGAGG GGGAGATCAG CCCCTTTAAC GCCTTAATGA CCTCCCTCTC AGCCACTATC
GGTACGGGTA ATATCGCGGG TGTGGCTACC GCCATCTTTA TCGGTGGACC GGGCGCGCTG
TTTTGGATGT GGTGTACGGC GCTGGTCGGC ATGGCAACCA AGTTTGCCGA GGCGGTATTA
GCGGTGAAGT ACCGTGAAGT CGATGATAAT GGTGACCATA TTGGTGGTCC CATGTATTAC
ATCAAGAACG GCCTCGGTAG TAAGTGGGCC TGGCTGGGCA CTGCTTTCGC GCTATTTGGC
TCCTTTGCCG GTTTCGGTAT CGGTAATACG GTGCAGTCAA ACTCGGTTGC CGATGCGCTG
AGCAGTAACT TCGGTGTACC GACTTGGGCG ACGGGGGTCG TTCTTATGAT GCTGGTGGGC
GCCGTGCTTA TGGGCGGTAT CAAGCGTATC GCCGATGTGG CTGGTAAGCT GGTTCCCTTG
ATGACACTGT TTTATATCGC TGCCGGTCTG GCTGTGTTGG CCGTTAATGC CGCTGCGATT
CCCGATGCGA TCGTTATGAT TGTTCATAGC GCATTTAACC CGGTTGCCGC GCAGGGTGGT
TTTGCCGGTG CGGCGGTTTG GGCGGCGATC CGCTTCGGTG TGGCGCGTGG TGTGTTTTCA
AACGAAGCGG GCCTGGGTAG TGCGCCAATT GCTCACGCCT CTGCGCAGAC CAATAATCCT
GTGGCTCAGG GCTTAGTCGC CATGTTGGGC ACTTTTATCG ATACCTTGAT TGTCTGTAGT
ATTACCGGTC TGGCAATTAT TGTATCGGGT GCCTGGACAT CCGGTGAGAA TGGCGCTGCA
TTGACTTCGC TTGCCTTCTC GACGGCGATA CCGATGGGAA ATTACATCGT TGCTGTAGCT
CTGTCTGTCT TTGCTTTCAC TACTATATTG GGTTGGAGTG TTTACAGCGA AAAGTGTGTG
CAGTATCTGT TCGGTGTTAA AGCCGTTAAG CCTTTCAGGG TACTCTGGAT ATTGGTGGTG
CCTCTGGGCG CCGTGAGTTC GCTGGACTTT ATCTGGTTAC TAGCCGATAC CCTGAACGCT
ATGATGGCCA TTCCTAACCT TATCGCTTTG GCATTGCTAA GCCCTGTGGT ATTTAGTCTG
ACCCGCGAGT ATTTTATCAA GAAGCGTGAA GATGAAGCCC AGGCTAAAAT CGCTTCGTGA
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| Protein sequence | MEGITEFVSM INGFVWGTPM LVMILGVGLF LSVGLKLMPI LKLGTGFKLL WSGRIPDKDK
TMEGEISPFN ALMTSLSATI GTGNIAGVAT AIFIGGPGAL FWMWCTALVG MATKFAEAVL
AVKYREVDDN GDHIGGPMYY IKNGLGSKWA WLGTAFALFG SFAGFGIGNT VQSNSVADAL
SSNFGVPTWA TGVVLMMLVG AVLMGGIKRI ADVAGKLVPL MTLFYIAAGL AVLAVNAAAI
PDAIVMIVHS AFNPVAAQGG FAGAAVWAAI RFGVARGVFS NEAGLGSAPI AHASAQTNNP
VAQGLVAMLG TFIDTLIVCS ITGLAIIVSG AWTSGENGAA LTSLAFSTAI PMGNYIVAVA
LSVFAFTTIL GWSVYSEKCV QYLFGVKAVK PFRVLWILVV PLGAVSSLDF IWLLADTLNA
MMAIPNLIAL ALLSPVVFSL TREYFIKKRE DEAQAKIAS
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