Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0573 |
Symbol | |
ID | 5609612 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 699606 |
End bp | 700106 |
Gene Length | 501 bp |
Protein Length | 166 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931418 |
Product | MshA, mannose-sensitive haemaglutinin |
Protein accession | YP_001472313 |
Protein GI | 157373713 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.200044 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAGGC ATTCGGGTTT TACACTCATA GAGCTCGTGG TGGTTATTAT CATCCTGGGC ATACTGGCTG TAACTGCGGC GCCTAAGTTC ATTAACTTAC AAAATGATGC GCGTATCTCG ACGGTGCAGG GGATGAAGGC CGCGGTGGCC TCCGAAGTGC TTCTGGTCCA TTCCAAGGCA TTGATACAAG GGTTAGAGAA AGACAGTGAA GTCGATGTCG ATCTGGGCAG TGTGACAGTA AAAAGCGTGT ATGGTTACCC TAAGGCCGAA TTTAGTTCGA CCTGGTCAAA ACTGCTCGGT GGTGAGTTTG GTGAAGCCGG CTACGTCGAT CCCGCCGAAT ATGACTGGAT CTGGCGCAAT CGCACCGGCG GCAGCAACAT AGGCCTCTAT TTTATGCCCA GAGGCTACTC CGACGATAAT CAAAATTGTT GGGTAAGGTA TCAGCAGCCG ACAGAAGCCG GTGGCGAATA CCAGTTAACC ATAGAGACCA GCGGCTGTTA G
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Protein sequence | MNRHSGFTLI ELVVVIIILG ILAVTAAPKF INLQNDARIS TVQGMKAAVA SEVLLVHSKA LIQGLEKDSE VDVDLGSVTV KSVYGYPKAE FSSTWSKLLG GEFGEAGYVD PAEYDWIWRN RTGGSNIGLY FMPRGYSDDN QNCWVRYQQP TEAGGEYQLT IETSGC
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