| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0570 |
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| Symbol | |
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| ID | 5609816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 694715 |
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| End bp | 697270 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931415 |
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| Product | Ig domain-containing protein |
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| Protein accession | YP_001472310 |
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| Protein GI | 157373710 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.131384 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTGA TAAAAACTGC TTTTGCTCTC CCTCTTTCAT TCTTGCTTCT ATCTTCTCTG
GGGGGCTGTA ATGGCGCTTC CGATGATAGC GGTGGAGAGA ATACAGGAGA GTATGCCCTC
TCACTGAGTT ATAAAACGGT TGTCGACGGC AAATGCGCCG ATGCAACCAA CGACTTGAGC
TTTGCCAATA ATGCCAGCAT CTGTGCGGTG GCCAAGTTAA CTCAGGGAGG GAGTAACAGT
AACGGTGGTT TAATCAGTTT CAGCGCAACT CTAGGTGAGC TGAGTCCCGC AACTAAACTA
ACAGATACTC AAGGTATTGC CGAAGTCATA CTTGGTAATG CTCAAGCCTC TCTGGGTGCC
GGAACGCTAA CCGCGCAATT CGATACTAAG GCGGCAGAGA ATAATATCCT TGCAGTCAAT
CGTAACTATG AGTTTGTCGA CGACGGCATT CCCGATGAAG ATACGCCAAA AATCAGCGCC
AGCATCATTA ACGGTGCCGC GACGGTTACT CAGTTTAAGG TCGATGAAAC GGTACAGCTT
CAGGCACAGT TCTTAGACAG TTCGAGCCAA GGTATTGCTC AGCAGATTGT CACCTTTAGT
GCGGGAAGCA CCACCCTGAA TCCGAATACG GCGCTCACTA ACGAGCAGGG TATTGCACAA
GTCAGCTACA CCCCATCAGA GAATGAACTG GGTGCAGCCA GCCTGAATGT CTCTTTGAGC
TATAAAGATC AAGGCTACCA GGAAAACAGC CTCTATGAGG TACTACCGGC AAATGCGATT
GGTGATGACG GTGTCCTTAA ATTGGGACAC TTTGATGACA ACAATAATTT TATTGAAGAT
GAGCTAGCCA CCACGCTTAC CCCCGTCGAT GGTAAATATC GCATCAGCGC GGGTGGTAGT
TTCGGCATCA CGGCAACCTT AGTCAGCGTG GCCGACGATG GCACCATTAC CCGGGTTCAG
ACCCCCTCAT CGATAAGCTT TGGCTCCGAT TGTGTTACCA GCAATAACGC CAGTCTGGAT
ACCCCGGTCA CCACACTATC GGGCAGCGCC GGCTCAACTT TCCAGGATAC CAGCTGTAGC
GGTAACAGTG AACGTGACGA TCAGATAGTC GCGACCACTC AGGCCGGTAA TCAAACCCTG
ACGGCAAACC TACCCTTCAC CTTGGAGCGT CAAACGCTGG CGAGTCTGAG CTTCCTTTCG
GCAGAGCCTA AGAATATTCG CATCAAGGGC GCAGGCGGCA CCGGCAGCAC AGAATCATCT
CTGGTAACCT TTAAGGTAAC CAGCTCTAAC GGCCAACCGG CAGCGCAGCA GGCGGTTAAG
TTTACGCTCG ACACGGTTGT CGGTGGATTA AGCTTCTCAA ATGGCGCGGC CACCGACGAG
AGCCTGACCA ACTCGCAAGG TATTGCCAGC ATTCGCGTTC TGGCTGGTAC CATGCCGACC
CCGGTGCGTG TACTTGCCTC GGCCACCGAC ACTGACACAA ATGAGACCAT CACCAGTCAG
TCTGAGCAGC TCACAGTCAA TACCGGCCTG CCTCAACAGC TTGGCTTCAG TATATCGACC
AGCATGTTTA ACCCGGAAGC GGGTGATTTT AATGGTGAAA AGGTGACGCT AACAGCTTAT
GCCTCAGACA CCTTCGGTAA CCCAGCTCCC GATGACACCA CCATCAACTT TACCAGCGAA
GGTGGCCAGA TAGTCCCCAG CTGTCTGACA GTCAACGGCA GCTGTAGCGT CGAGTGGACA
TCGGCAAACC CAAGGGTTCC GGATCATCGC ATCACCGTTC TTGCCTATGC GCTTGGACAT
GAGACTTTCT TCGATACTAA CGGCAATAAC GTCTTCGATG ATAAAGATGT CACTGTAGAT
GCCGAGGGCA AACCTGTTGT AGACAAGGCT TGTTTAAATA GTGACGGACA AGCCATTCAC
TGCTCAGGCA ATGGTATGGA TATCGAGGCC TACCTACCGA GTGGTTTCAG CGACTTAGGC
GATGCCTTCC GTGATGATGA CGAGAGCTTC TCCTATACGC CTGGTGAGAA GTACTTCAAC
ACCACAAGCA GTGGCGAATA CCAGATCCCT GATGGTAAGT TCAACGGCCC TCAATGTCAG
TCCACAATCG TTGGCTGCGA ACCTAATACC TATATCCGCA AGGCGCTGGT TATGACCATG
TCCGGTTCGA GTGCAGGCTT CACCATCTGG CAGGGCAACA ATTTAATCCG CGATGATTTC
GGTCTGGCAA CGGGGTCAAT TGTGCCATTA ACGGCGATTG CAGCCGGAGA GTCATCGAGC
TTCACTGTGC AGTTCTATGA CAGCGCTTAT CAGATCATGC CAGCCAGCAC TCAGGTGGCA
GTCGAAGCCT CAGCAGGAGA GCTTATCTTC GATGCATTTG AAGTTGCTAA CACGACGCGT
CGCGGCGGCA CTACGACTGG CTTCATTATC ACTAACGATA TCGATCCTGG CAGTACAGGA
GAGCCTGCAA AACTCAGCAG CGTGAGCATT AACCTGACAA CACCGAAGAA CTTTAAATCG
GGTGCGGGGC TAAGCATCAC CCTATCGGGT ACCTAA
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| Protein sequence | MRLIKTAFAL PLSFLLLSSL GGCNGASDDS GGENTGEYAL SLSYKTVVDG KCADATNDLS
FANNASICAV AKLTQGGSNS NGGLISFSAT LGELSPATKL TDTQGIAEVI LGNAQASLGA
GTLTAQFDTK AAENNILAVN RNYEFVDDGI PDEDTPKISA SIINGAATVT QFKVDETVQL
QAQFLDSSSQ GIAQQIVTFS AGSTTLNPNT ALTNEQGIAQ VSYTPSENEL GAASLNVSLS
YKDQGYQENS LYEVLPANAI GDDGVLKLGH FDDNNNFIED ELATTLTPVD GKYRISAGGS
FGITATLVSV ADDGTITRVQ TPSSISFGSD CVTSNNASLD TPVTTLSGSA GSTFQDTSCS
GNSERDDQIV ATTQAGNQTL TANLPFTLER QTLASLSFLS AEPKNIRIKG AGGTGSTESS
LVTFKVTSSN GQPAAQQAVK FTLDTVVGGL SFSNGAATDE SLTNSQGIAS IRVLAGTMPT
PVRVLASATD TDTNETITSQ SEQLTVNTGL PQQLGFSIST SMFNPEAGDF NGEKVTLTAY
ASDTFGNPAP DDTTINFTSE GGQIVPSCLT VNGSCSVEWT SANPRVPDHR ITVLAYALGH
ETFFDTNGNN VFDDKDVTVD AEGKPVVDKA CLNSDGQAIH CSGNGMDIEA YLPSGFSDLG
DAFRDDDESF SYTPGEKYFN TTSSGEYQIP DGKFNGPQCQ STIVGCEPNT YIRKALVMTM
SGSSAGFTIW QGNNLIRDDF GLATGSIVPL TAIAAGESSS FTVQFYDSAY QIMPASTQVA
VEASAGELIF DAFEVANTTR RGGTTTGFII TNDIDPGSTG EPAKLSSVSI NLTTPKNFKS
GAGLSITLSG T
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