| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0557 |
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| Symbol | |
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| ID | 5614080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 675290 |
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| End bp | 678010 |
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| Gene Length | 2721 bp |
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| Protein Length | 906 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931402 |
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| Product | MSHA biogenesis protein MshQ |
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| Protein accession | YP_001472297 |
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| Protein GI | 157373697 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0109211 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.590942 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAAAA TAGTGCTCAG TCTCGCGTTG CTGTTCCCGG CCTTGGCGAT AGCCGTTCCC
TATTGTAGTG ATATCTTTAC CGACCCACCG ACAGGGGATC ATGGTGAAAA TGGCTTAACA
CCGCCAGCCA ATATCGGTCC TCCTCTTGGG GATCTAAACT GTACTAGAAA GAGGGGCTGT
GACAACAGCA CATCTGGCTA TTTTTTACCC GGAGACTACA GCTTTAGTGA AGGAAATTTT
CATGGAGGCG GTCCTTCTCT CGTCAATCAC ATTACCACTA ACGGCACCAC CGCTAGGCTC
TATTTTGATC GGGTGTCTTT GAGTGGTGTT AGCTTAAATA CCTATGGTAA AGCCGAAGAT
TTAATTATCT ATGTACGTGA AGATCTTACG ATTGCCGGCC ACAACCACAT TAATGGCATT
ATCTATGTGG TTGGAAATGT TTCGCTAACC GGAAACGGCT CTGTAACGGG CGGCTTAGCG
GCTGGTGGCA GTGCCGGAGT GGGTGGTAAC GGTGATTTCG TCTTCGATGA AGAGGCTATC
GACAATGCCG ACTTTGGTGG TATGTGTATC CCTGGGCCTA AGCCAGACTT AAACCATTAC
CGTCTTGAGT TTTCGTCTGG GGCATTGAGC TGTAAGGCAA AAGATATCCT TATTCGTGCT
TGTGCTGATG AATATTGTGC TACGGAAACA TCAGTTTTAT CGAGTGTCGA TTTGACCAAA
AACGGTGGCG TATACAGTAC GGTTAACTTC GCAGGGCATA CAGTTCCGGC TGCAGAGCTC
TGGCATGCGG ACGGGGGAAC AGTTTTAGTT GGTCTTGGAG CTACCGCTCC GTCAGCTCCT
TATCGCTGCT TCATCGATGG CCTTGAAGTC GCCAATATTG CCGACTGTCA ATTAACCTTT
GAAGACACTG GTTTCTATTT TGATGCACCG GATACGATAT CTTATAAAGA TAGCGGTCAG
TTTGAACTGT TTGCTGCCAC CAAAGACCCT GTTACTCAGA AGTGTGAGTC TCTCTTTAAG
AATCAAACCA AGTCTGTAGA TTTTTCGTTT AACTATAAAG ACCCAAACCC GGTGAATAAC
CCCGCATCAT TAATGCTGAC GGCGCCCACT CAGAGTAAAG TAATTGCAGG TGGTGATACC
GAGAGTGTGA GTGTGAAATT TGACGCAGAA GGAAAAGCAC TGTTAACGGT GAACTACCCT
GAAGCCGGCG AGGTGACACT CAAGGCATCC CATACCCATA CGGTGAATAC ACCAAATGGC
TCAGAGGAGT TAGTGCTCGA GCATCAAGAT AGCTTCGTCG CTAAACCGGC AGGCTTCCAC
TTTTTCAATG AATCAGCTAA CAATCGATGC GCCAGCTCCG ATCCCTATGA TGCAGACTGC
AAAGTACTAG CTAAGGCTGG AGAAAGTTTC GATATGCGCC TGAAAGCCGC AGGCTGGACC
TCAGACGAAG ACAGCGATTT CAGCGATAAC CCTGTTCTGC AAAATTTTAA GCATAGTAAT
ATTCAGATAC AGGCAGCGGT AGAGGCACCA TCGCTAGCCG ATGGAGGCAC CAATGGCAGC
TTTAGCACTT CTGCGGTAGA TTTCAATTTA TCGGGTAGTG AGAGTTCACA ACTTATCAGT
CAAAGTTGGA CTGAAGTGGG GACTCTCACG GCAAAACTCA CTCAAGATAT CAGCTATCTG
GGGGTCACCA TCTCAAAAGA TAATGCCAGC AGTGAACTGT TTGGCCGTTT CACTCCGGCT
TATCTGGATA TATCCGGAAA CTCTCCCTCA CTGACTCATA GCTGCGGCAG CTTTACCTAT
ATAGATCAAC CCTTTGGTTT TTCAGGAGGC GGAGAACCAA TCATTCAGGT AAGAGGCATG
GCCAGTGATG ATAGTGAAGC AAGAAACTAT CAGCTTGGTG ACTGGTGGCG ATACAAGCAT
AAAGAGGAGG CAAGCAGAAA TCAGTGGCTT GGAAGAGGTT ATGAAGATAA AACCGGTGAG
CTACAAGTTC AAGATAGTGA ATATCCGGGT TTATCGGGCA GTGTGAGCTA CGCCAATAAC
GCTAATACAG CTACATTAAC AGGTGCTAAA GTCGAGTATG TGCGTTTGCC TACCCCAATG
GTACCGTTCG ATGCTAAATT TGATCTTAAG TTAGCAGTAA CAGATCTCAC CGATGAGGAT
GGTATCTGCT ATCAAGCCGA CTCGTCCGGT AGCTGCCAGC CTTTCTCTTT CGAAGATATT
GCCGATGGCG CCTCATTTGA GCTAAGGTAC GGCCGTTTGC AGTTGGACAA CGGTTATAGC
CCTCAGTCGG AAAGCCTGCG TCTGCCTTTG CGAACCGAGT ATGTCAGCGC GGTTGATGCG
GCTAATGTCC CGACCTGGGT AACCAACGGT GATGATAGCT GCTCTGTGTA TAACACGGTA
ACCTCGACGG ATACCACAGA GGCAGTGACA ACAGGGATGA ATATGACCTT GCCAGCAGGT
TTCCCGGCGA TAACGGCTCA CAGTAATGAC GAATTAACTT CGCAAAGCGG AACTGCCTTA
CAAGGTGTTA ATCATATCTA TTTTACCGCT CCGAATACGC CTGGGGAAGT TCGGCTCAAG
CAACATGTCG AGCCTTGGCT CAAGTGGTAT TGGAATTATG ATGGCAACAA ACCTAACGCT
CTCTATGATC CGCGAGCTTC GGCCTTCTTC GGTACCTATC GCGGCCACGA CAAGGTGATC
TACTGGCATG AAGTCAATTA G
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| Protein sequence | MFKIVLSLAL LFPALAIAVP YCSDIFTDPP TGDHGENGLT PPANIGPPLG DLNCTRKRGC
DNSTSGYFLP GDYSFSEGNF HGGGPSLVNH ITTNGTTARL YFDRVSLSGV SLNTYGKAED
LIIYVREDLT IAGHNHINGI IYVVGNVSLT GNGSVTGGLA AGGSAGVGGN GDFVFDEEAI
DNADFGGMCI PGPKPDLNHY RLEFSSGALS CKAKDILIRA CADEYCATET SVLSSVDLTK
NGGVYSTVNF AGHTVPAAEL WHADGGTVLV GLGATAPSAP YRCFIDGLEV ANIADCQLTF
EDTGFYFDAP DTISYKDSGQ FELFAATKDP VTQKCESLFK NQTKSVDFSF NYKDPNPVNN
PASLMLTAPT QSKVIAGGDT ESVSVKFDAE GKALLTVNYP EAGEVTLKAS HTHTVNTPNG
SEELVLEHQD SFVAKPAGFH FFNESANNRC ASSDPYDADC KVLAKAGESF DMRLKAAGWT
SDEDSDFSDN PVLQNFKHSN IQIQAAVEAP SLADGGTNGS FSTSAVDFNL SGSESSQLIS
QSWTEVGTLT AKLTQDISYL GVTISKDNAS SELFGRFTPA YLDISGNSPS LTHSCGSFTY
IDQPFGFSGG GEPIIQVRGM ASDDSEARNY QLGDWWRYKH KEEASRNQWL GRGYEDKTGE
LQVQDSEYPG LSGSVSYANN ANTATLTGAK VEYVRLPTPM VPFDAKFDLK LAVTDLTDED
GICYQADSSG SCQPFSFEDI ADGASFELRY GRLQLDNGYS PQSESLRLPL RTEYVSAVDA
ANVPTWVTNG DDSCSVYNTV TSTDTTEAVT TGMNMTLPAG FPAITAHSND ELTSQSGTAL
QGVNHIYFTA PNTPGEVRLK QHVEPWLKWY WNYDGNKPNA LYDPRASAFF GTYRGHDKVI
YWHEVN
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