| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0555 |
|---|
| Symbol | |
|---|
| ID | 5614065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 674004 |
|---|
| End bp | 674813 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640931400 |
|---|
| Product | methylation site containing protein |
|---|
| Protein accession | YP_001472295 |
|---|
| Protein GI | 157373695 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0166475 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.583012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGGCT TAAGACAGCT ACGCAAGAGC GACGGTTTTA CTCTGGTTGA GATGGTAATG
GTGATCATCA TCTTAGGCAT CTTGGTGCTG GGGGTCAGTA GCTTCGTGAT CATAGGCACC
CGCATCTTCG TCGAATCAAC CTCGGTGGAT CAGGTGCTCA GTCAGAGTCG TTTCGCCATC
GAACGTATGA CCCGCGAAAT TCGAAACGCC GTACCAAACA GTTTGCGTGT TACCAATACA
GCAACATATC AATGTATGGA GTTTATGCCA ATTCAGGGCA GTGCCTCCTA TATCGATCTG
CCTATCGCCC CAGAGGCGGC AAGCGAGACC GGTAGCATAA TCACGCCATC ACAGGGCATC
AACAATACAC ACCGAATGTT GGTCTACCCT CTGACACCGG CTCATATCTA CGAGGCTGAC
CCTACTTCAT CAGAAGGACG TCTATTGGAT ATAGAGAAGG TTGAAGGTAA TACTGTTACT
TTCGATCGGG CAGTGCGTAT CAGCGAGGCG TCTCCGAGAA ACCGTTATTT TATGGTAAAC
AACGCGGTGA GTTACTGCTT CTTTACCAAT GGTGATGTCA GGCGCTATGA AGGCTATAGC
ATGTTTAATA CGGCGCAACC CGCTCCTGCG GATATGGGAG ATGGGGTGTT GATGGCTGAG
GGTGTGGTTA CCGGCACAGG CACATGGCCA ATCAACTATA CTCCCGGCAG CTTAACCAAT
AACGCCGTCG TACAGTTAAC GCCGACATTT ATGGTCAATG GTCAGGAGTT TCAATATCAG
CACCAGGTGC AGGTGGTCAA TGTCCCCTAA
|
|---|
| Protein sequence | MSGLRQLRKS DGFTLVEMVM VIIILGILVL GVSSFVIIGT RIFVESTSVD QVLSQSRFAI
ERMTREIRNA VPNSLRVTNT ATYQCMEFMP IQGSASYIDL PIAPEAASET GSIITPSQGI
NNTHRMLVYP LTPAHIYEAD PTSSEGRLLD IEKVEGNTVT FDRAVRISEA SPRNRYFMVN
NAVSYCFFTN GDVRRYEGYS MFNTAQPAPA DMGDGVLMAE GVVTGTGTWP INYTPGSLTN
NAVVQLTPTF MVNGQEFQYQ HQVQVVNVP
|
|---|
| |