Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0552 |
Symbol | |
ID | 5610255 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 672263 |
End bp | 672742 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640931397 |
Product | MSHA pilin protein MshA |
Protein accession | YP_001472292 |
Protein GI | 157373692 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00386307 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.526597 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATAAGC AAAGCGGTTT TACACTAATC GAATTAGTGG TTGTTATTAT CATACTAGGT ATTTTGGCTG TAACGGCTGC ACCTAAGTTC ATTAACCTTC AAAGTGATGC TCGTGTATCT ACGCTTCAGG GAATGAAAGC GGCCATCCAA GGGGCTAACT CACTCTATTA TTCGAAAGCG GCAATAGGCT CTCATGAGAA GAAAGACTCA GTAACAGTTG AAGGTGTGCT TGTTTCTTAT GGCTATCTTC AGGCTACTAA AGCGAATATG GTTTTGGCGC TTGAGATTGC AGAGAGTGAT TGGACCATTG ACGATACTAC TGACCGAGTG GCAGGCGTTC CGCCAGCAAA GTCTACACCT GGTGTAATCA CCATTTCGCA GACCGATGCG CCTTCTACCT GTACATTTAC CTATACAGAG GCAGATTCAG CTTCAGACAC TCCAAGCTTC TCGGTAATGC CTGACGCGGA TAAGTGCTAA
|
Protein sequence | MNKQSGFTLI ELVVVIIILG ILAVTAAPKF INLQSDARVS TLQGMKAAIQ GANSLYYSKA AIGSHEKKDS VTVEGVLVSY GYLQATKANM VLALEIAESD WTIDDTTDRV AGVPPAKSTP GVITISQTDA PSTCTFTYTE ADSASDTPSF SVMPDADKC
|
| |