Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0508 |
Symbol | |
ID | 5614122 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 623989 |
End bp | 624969 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931353 |
Product | putative CheW protein |
Protein accession | YP_001472249 |
Protein GI | 157373649 |
COG category | [K] Transcription [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [COG0835] Chemotaxis signal transduction protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGACT TGAAAAAATC TGAGATCCTT ACCGAGAGTG GTACCAACGA GCTCGAAATT ATCGAGTTTC ATCTGCATAA ATTACTCCCC GATGGCGGTT TTAAAGTATG TCATTACGGG ATTAATGTGG CTAAGGTGCG TGAGGTGATT CTGGTGCCGA GCACATCTGA TTATCCTAAT GCTCAGCCGC ATATGGTGGG TGTATTTTCC TTAAGGGATA TCTTGATCCC CTTGGTAGAT CTGGCCGGGT GGCTTGGGAT CCCGACGAAA GATGACTTGA CTCATAAGGT TGTCATTGTC ACCGACTTTA ACAAGATGAT TAATGGTTTT TTAATCGATA GTGTTCGCAG TATTCATCGG GTGTCATGGG AGCAGGTCGA ATCCCCCAGT CAGTTTTTAG AGGCGGGCGA ACAGGATTGT GTCGTCGCCG TTGTCAGGCG GGAGGGGCAT CTGATTATGG TGTTGGATTT TGAGAAAATC ATCGCAGATA TCAATCCGGA ATTGAGTATG GATAAATATG ATGTACTTCA GGATAAGAGT GTCATTATCG ACGATACCAT GCTGGCTAAG CGTGAAGCTA AGACCATACT GGTTGTCGAT GATTCCGCGT TTATCCGTAA GATGATTGAA AATACATTGA GATCGGCTGG GTATAACATT ATTACAGCGA AAGATGGTGG CGATGCTCTC GAGATGTTAC TGGAATATGA GCGTTTAGCC GTCGATGAGG GGGCTTCGGT TAATGATTTC GTCAGTGCCA TCATTACCGA TGTGGAGATG CCCCGCATGG ATGGTATGCA CTTAGTGAAG CGCCTGCGTG ATACGAGTGC CTATAGCAAT ATGCCTATTG TAATGTTCTC GTCTCTGATG AGTGAGGATA ACCGCAGTAA GGCGTTGCAA CTCGGCGCGA ACGACACCAT AACTAAGCCA GAGATCGGTC GCATGGTCGG TATGATGGAT GGCTACGTGC TCGATGATTA A
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Protein sequence | MNDLKKSEIL TESGTNELEI IEFHLHKLLP DGGFKVCHYG INVAKVREVI LVPSTSDYPN AQPHMVGVFS LRDILIPLVD LAGWLGIPTK DDLTHKVVIV TDFNKMINGF LIDSVRSIHR VSWEQVESPS QFLEAGEQDC VVAVVRREGH LIMVLDFEKI IADINPELSM DKYDVLQDKS VIIDDTMLAK REAKTILVVD DSAFIRKMIE NTLRSAGYNI ITAKDGGDAL EMLLEYERLA VDEGASVNDF VSAIITDVEM PRMDGMHLVK RLRDTSAYSN MPIVMFSSLM SEDNRSKALQ LGANDTITKP EIGRMVGMMD GYVLDD
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