Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0496 |
Symbol | |
ID | 5613315 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 611182 |
End bp | 611904 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640931341 |
Product | TPR repeat-containing protein |
Protein accession | YP_001472237 |
Protein GI | 157373637 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAGTC TTGCTATCGG TATTGGGGTA ACACTTTGTG CTTTTATAGC ACTGATCTGG CGACATCATC TCCGGTGTCT CAATCAAGGG GTCATTCATA TTGCAAAGCA GTCAAATGCA TGTGATAGCG AAGTGATAAC ACCATCTTTA GATATAAAGA TACCTGTGCT GCTATCCATA GTGCTCCTTT TTTCGAGCGT ATCACTTTAC TCGCAACTGG GTCACTTCAG TGACTGGGAT AAAGGGAGCG TAGATGAACA TATTGATTAC CTGATCACCG CAGATATCAA TAAAAATGCA AAAACAGTTA ATGAGCAACC AAACAATGAA ATTGCATTAT TAAATTTGGC TCAATCTTAT GCCGATGGTG GGCTTTATTC AGATTCAGTG AAAACCTTCG ATGAACTACT TCAGTTAACG GGTGATGATG CCGGTATTTT GGGCATGAAA GCCAATGCCA TGTACTACCG TGATAACCGG GCGATGAGTC TCGATATCGA TCTCGTTATC GCCAGAGCAC TCGCTATCGA TGAATATGAA TTTCAGTCCA GATTACTGCT AGCGACTCAC GGATACCTTA ATGGAAATTA TGAAGAAGCC ATTAAGCAGT GGGAGTTGTT ACTCAAGAGT GATAGCCAAA GTTTTAATAG AGACTCAATT AATAATGCAA TTTTACGAGC CGAGCAAAAA ATAGCTAATC GTTCAGTGAC TGCATCTGAG TAG
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Protein sequence | MNSLAIGIGV TLCAFIALIW RHHLRCLNQG VIHIAKQSNA CDSEVITPSL DIKIPVLLSI VLLFSSVSLY SQLGHFSDWD KGSVDEHIDY LITADINKNA KTVNEQPNNE IALLNLAQSY ADGGLYSDSV KTFDELLQLT GDDAGILGMK ANAMYYRDNR AMSLDIDLVI ARALAIDEYE FQSRLLLATH GYLNGNYEEA IKQWELLLKS DSQSFNRDSI NNAILRAEQK IANRSVTASE
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