Gene Ssed_0485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0485 
Symbol 
ID5613355 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp599191 
End bp599898 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content35% 
IMG OID640931330 
Productcytochrome c biogenesis factor-like protein 
Protein accessionYP_001472226 
Protein GI157373626 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG4235] Cytochrome c biogenesis factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.653619 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATAT TACTAATTAG TATTGTTGCG CTTTGTGTAT TGTTACTAAT GACTTTTTTT 
GGTCATCATA CTTTATATAG AATTAAACAT ACGTCATTTT TTAGTGATTG TAATGAGCTC
GACTCAAATC GTACTAAATA TAGTCGTTCA AGCTTTTCAT TTGTACTGTT ATTAAACGTC
ACGGTTATTA CCAGTGTTGT TACTGTCTAC TCATATTTAG GCCGTTACAA TGAAATTGAT
TTAGCAAGAG CAGATGTAAA TGTCGATTAT TTACTCGCTG CGGAAATAAA CAGAGCAAGA
AAACAGGCCA ATGAGCAGCC GAACGATAAA TCTGTGCTCA TGGGCTTGGC CAGGGCATCA
ATGGATGGAG GATTATACCT CGAAGCTATT GAGGCTTTAG ATGAGCTGTT GTTCTATATG
GGTGACGATG CCGAAATTAT CGGTTTAAAA GCTACAGCAC TATATTATAA GAATCATCGT
TCTATGACTA GTGAAGTTAA ATTGCTGACT CAAAGTGCGC TAGCTTTATA TCCGCATGAC
TTCAACACTA GAGTGTTGTT AGCTAATGAC GCCTATATCA ATCACAAGTA TCAAGAAGCC
ATAAGTCACT GGCAAATTTT ATTAAAGAAT ACTAAGCAGC CATTTAACCG CAATGCAATT
GAGTTTGCGA TTAATAATGC AAAGAAAAAT CTATTTGCTA AAAAATAA
 
Protein sequence
MNILLISIVA LCVLLLMTFF GHHTLYRIKH TSFFSDCNEL DSNRTKYSRS SFSFVLLLNV 
TVITSVVTVY SYLGRYNEID LARADVNVDY LLAAEINRAR KQANEQPNDK SVLMGLARAS
MDGGLYLEAI EALDELLFYM GDDAEIIGLK ATALYYKNHR SMTSEVKLLT QSALALYPHD
FNTRVLLAND AYINHKYQEA ISHWQILLKN TKQPFNRNAI EFAINNAKKN LFAKK