Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0485 |
Symbol | |
ID | 5613355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 599191 |
End bp | 599898 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 640931330 |
Product | cytochrome c biogenesis factor-like protein |
Protein accession | YP_001472226 |
Protein GI | 157373626 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.653619 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATAT TACTAATTAG TATTGTTGCG CTTTGTGTAT TGTTACTAAT GACTTTTTTT GGTCATCATA CTTTATATAG AATTAAACAT ACGTCATTTT TTAGTGATTG TAATGAGCTC GACTCAAATC GTACTAAATA TAGTCGTTCA AGCTTTTCAT TTGTACTGTT ATTAAACGTC ACGGTTATTA CCAGTGTTGT TACTGTCTAC TCATATTTAG GCCGTTACAA TGAAATTGAT TTAGCAAGAG CAGATGTAAA TGTCGATTAT TTACTCGCTG CGGAAATAAA CAGAGCAAGA AAACAGGCCA ATGAGCAGCC GAACGATAAA TCTGTGCTCA TGGGCTTGGC CAGGGCATCA ATGGATGGAG GATTATACCT CGAAGCTATT GAGGCTTTAG ATGAGCTGTT GTTCTATATG GGTGACGATG CCGAAATTAT CGGTTTAAAA GCTACAGCAC TATATTATAA GAATCATCGT TCTATGACTA GTGAAGTTAA ATTGCTGACT CAAAGTGCGC TAGCTTTATA TCCGCATGAC TTCAACACTA GAGTGTTGTT AGCTAATGAC GCCTATATCA ATCACAAGTA TCAAGAAGCC ATAAGTCACT GGCAAATTTT ATTAAAGAAT ACTAAGCAGC CATTTAACCG CAATGCAATT GAGTTTGCGA TTAATAATGC AAAGAAAAAT CTATTTGCTA AAAAATAA
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Protein sequence | MNILLISIVA LCVLLLMTFF GHHTLYRIKH TSFFSDCNEL DSNRTKYSRS SFSFVLLLNV TVITSVVTVY SYLGRYNEID LARADVNVDY LLAAEINRAR KQANEQPNDK SVLMGLARAS MDGGLYLEAI EALDELLFYM GDDAEIIGLK ATALYYKNHR SMTSEVKLLT QSALALYPHD FNTRVLLAND AYINHKYQEA ISHWQILLKN TKQPFNRNAI EFAINNAKKN LFAKK
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