| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0482 |
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| Symbol | |
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| ID | 5613240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 595777 |
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| End bp | 597813 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931327 |
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| Product | cytochrome c, putative |
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| Protein accession | YP_001472223 |
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| Protein GI | 157373623 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACT GGAAACTAAA AACAGCCGCA GGTTTGCTGT TTTGTTTCAC CGCAGCAGCG
AATGTAAATG CTGCTGGTGG TAAATATAAT AGCGTTCCTG AAATGGGAGA ATCAGCAAAG
GCTGCAATTG CTAATTATCA AGGAACAGAA GAAACTAAAG GTGTTAAATC ACTTCATGAT
TATGTTGTTC AAGAAAGTGA GTTATTTGAT TTCTTATTCC AGAACCACCC GATGTTTAAA
TATCACGAAG AGGGTAACCT CATCGGTGAA TATCATATTA GTGACCGTGG TGAAGAGTAT
TTTGATACGG GTAACTCTCC TAAATATAGT GAGCGCGTTG GGCGTCCAAG TGCGGTTCAA
TATCGACTAG GTGCGAAGTC GACACTTGAT TTCCCAAACA ATTTTGTTGG CCCTGAGAAG
TGTGGTGAGT GTCACGCGGT TCAGTATGAG AAGTGGCAAC GCTCTCGCCA CGCTAACGTG
GTTCGATTCC CAAGTGAAAT TACCGACAAA GAAGTACCAA ATGGTGATCT AACTGCTCGT
CTTTACGGTA GTGAAGCGGC AATGTTACCT GATGGCATCC AGCCTGATGA TGTCTATGCA
ATCATCGGTA CTCCACGTAC TAAGTACGGT CTACTCGATA GCTATCTTGT TCGTGGTACC
TACCATATCC GTGACGGTCT ACTTTCTGAG GGTACAGGCA AGATGGTTGC CGGTGCTAAC
CAGTTCTCTC GTGGTTGGGC CGAGTGGTTA ACTCCAGAGA TGGCAAAGAA GATCAACAAG
GTTATCCCTG AGTTCCCAAC AACGATTGAA GGTTTTGGTG CTTCAGGTTC TCACCAGTGG
GGCATGAGCT CTTATGGTGC TAAGTACGAA AAAGAGATGC TATTTCAGCC AGCGAGTTCG
TACTGTGAAA TGTGCCATAC CTTCAAGTTT GACTTCCAAA ACAAGGAGGA GTACTTCGCT
GCCCTTGGTG ATAGCAAGAA GTTACAAGAG CATACGATCT CTAAAGGTAT CGCTTGTGAA
GAGTGTCATG GAGCAGGTGG TCACCTGGAT GGTGGTACCG GCGGTATGCA GTCTAACTGT
GAGCGTTGTC ACCAGCGTTT CAACTTCGTT GATGAGTTAG CTGACACCGA GAAAGGCCAA
GAGAAGATGG AATACGCCTT TGGCGTGAAG ATGAAGTCTG CTTGTCCATC TTGTGGTACT
GAAGGTTCAC AGATGTTTGC TTCTGCTCAC TACGAGAAAG GCATGCGTTG TACGACGTGT
CACGATCCAC ATGAAGTCAC TGATGGTGAT TTCCTATCAG GTTTCACTAA GCCTAAGCTG
AAGAAAGATT GTGTTGATTG TCACGAAGCG CAAGCGACGA TTGCAGACAA CACAGATACT
CATAGCAACC AAACTTGTCA GAGCTGCCAC ATGCCTGCCA TGGGTAGCTG TGAAAACTTC
ACTGCGGTTC AGTTCCCGGA TATGGCTGGC TTCGACGCTG TTCGTAAATC GCATATGTGG
AAAATTGATA TTCATCCAGA GCGCAAGACA CTAAATCCAC CAGAAGGTAA GCCACGTGAT
TCAGCTGTTA AAGGTTGGAC TGTAGCTAAG AACGAAGAAG ATCGTAACTA CCTGGATCTT
ATGTGGTCAT GTGCTCGTAC CTCTGTATCT GATCATGACA ACGTTGAGAA CAAAGGTTGT
CACAGCCCAT TTCAGTCAGA GCTGGAAACC GGCATGCACT ACAACGATCA GATGGAGATC
TACGGTGAAG TGATGAAGTG GCAGACACCC GTTAAAGAGG TGTATGCACA GGTTGAACAG
GCACTTGTTC GTATCGACCA GCTTCTTGAG GTGACTAAGT TACCAACTGA AGAGAAGACT
CAGGTTCTGA TGTTAGCTGA GAAGGCACAA GAGGCAGTCG ATCTAATTAA GAAAGATGGT
TCTTGGGGAG TACACGGTTT CCGTTACAGC CAGAAGCGTC TCGATGCTGC ACTTACCTAT
GTTACACAGG CTCAGAAGAT ATTAGATGGC AATGGCTATT CAGCTAAAGC TAACTAA
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| Protein sequence | MKNWKLKTAA GLLFCFTAAA NVNAAGGKYN SVPEMGESAK AAIANYQGTE ETKGVKSLHD
YVVQESELFD FLFQNHPMFK YHEEGNLIGE YHISDRGEEY FDTGNSPKYS ERVGRPSAVQ
YRLGAKSTLD FPNNFVGPEK CGECHAVQYE KWQRSRHANV VRFPSEITDK EVPNGDLTAR
LYGSEAAMLP DGIQPDDVYA IIGTPRTKYG LLDSYLVRGT YHIRDGLLSE GTGKMVAGAN
QFSRGWAEWL TPEMAKKINK VIPEFPTTIE GFGASGSHQW GMSSYGAKYE KEMLFQPASS
YCEMCHTFKF DFQNKEEYFA ALGDSKKLQE HTISKGIACE ECHGAGGHLD GGTGGMQSNC
ERCHQRFNFV DELADTEKGQ EKMEYAFGVK MKSACPSCGT EGSQMFASAH YEKGMRCTTC
HDPHEVTDGD FLSGFTKPKL KKDCVDCHEA QATIADNTDT HSNQTCQSCH MPAMGSCENF
TAVQFPDMAG FDAVRKSHMW KIDIHPERKT LNPPEGKPRD SAVKGWTVAK NEEDRNYLDL
MWSCARTSVS DHDNVENKGC HSPFQSELET GMHYNDQMEI YGEVMKWQTP VKEVYAQVEQ
ALVRIDQLLE VTKLPTEEKT QVLMLAEKAQ EAVDLIKKDG SWGVHGFRYS QKRLDAALTY
VTQAQKILDG NGYSAKAN
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