Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0467 |
Symbol | uvrD |
ID | 5612869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 577962 |
End bp | 580127 |
Gene Length | 2166 bp |
Protein Length | 721 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931312 |
Product | DNA-dependent helicase II |
Protein accession | YP_001472208 |
Protein GI | 157373608 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0210] Superfamily I DNA and RNA helicases |
TIGRFAM ID | [TIGR01075] DNA helicase II |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGTAT CTTCTTTACT AGACGGCCTG AATGACGAGC AGCGTGAAGC TGTAGGGGCA CCACAATCCA GCATGTTGGT ATTGGCGGGC GCCGGCAGTG GCAAGACTCG GGTGCTAACC CACAGAATTG CCTGGCTTAT GCAGGTTGAA CAGCAGAGTC CATATTCTAT TTTAGCGGTG ACTTTTACCA ATAAAGCGGC CGCTGAAATG CGTGAGCGGG TGGAAAAAGT CAGCGGCAGT AACATGGGGC GCATGTGGAT TGGTACCTTC CACGGCTTGG CTCATCGCCT GCTACGTACC CACTATAAAG ATGCCAACTT GCCTCAAACC TTTCAGATCA TCGACTCTGA TGATCAGCTA AGGTTAATCA AACGCATTCT TAAAAGCCTT CATCTTGATG AGAAGCAGTA TCCGCCTCGC CAAGCTCAGG GCTATATCAA TGGAAAGAAA GATCAGGGAT TACGTCCTAA GCATATCGAT GCGGGTGGTT TTCCTATCGA GCAAAACTTG CTGCAGATCT ATCAGGTCTA TCAAGAGTCG TGTGACCGAG CCGGTTTAGT CGATTTCGCC GAGATCTTAC TGCGTGCCCA TGAGCTCTGG CTTAACAAGC CTCATGTGTT GCAACACTAT CAGGACAGAT TTAAGAACAT TCTCGTCGAC GAGTTTCAGG ATACCAACGC CATTCAGTAT GCCTGGATCC GCGTGCTTGC GGGTGATAGT GCCAATGTGA TGATCGTCGG TGATGACGAT CAGTCCATCT ATGGCTGGCG TGGGGCACAG GTAGAGAACT TGCATAAATT TCTCGTAGAC TTCCCTAAGG CTGAGACAAT ACGTCTGGAG CAAAACTATC GTTCGACGGG TCATATCCTG AAAGCGTCCA ACGAACTCAT TGCCAATAAC CCTGAGCGAT TGGGTAAGAA GTTGTGGACC GAAGATAAAG ATGGCGAGCA GATCTCTCTG TATTGTGCAT TCAATGAGAT GGATGAGGCA CGCTTTATTG TCGGCAGAAT TAACGATTGG CATGATATGG GCGGGGATCT CAGTAGTTGC GCGATCCTCT ATCGCTCCAA TGCCCAGTCT CGTGTGCTCG AGGAGGCCCT GCTTCATAAA GGCTTAGCGT ATCGGATCTA TGGTGGTCTG CGTTTCTTCG AGCGTCAGGA AATTAAGGAT GCGATGAGCT ATCTGAGGCT TATCAATAAC AAAGACGATG ATGCCGCCTT CGAGCGTGTG GTCAATACTC CAGCACGCGG CATAGGTGGC AGAACGCTCG ATATCCTGCG CTCAACGGCT CGTCAGCAGG AGTTAACCCT GTGGCAGACC TGTTTGCGTG CACTCGAAGA GAAGCTATTG AGCGGCCGTG CAGCCAATGC GGTACGTGGC TTTATGGATC TTATCGTTGA GATGCAGCAA GACACAGATG AGATGACATT GCATCGCACC ACAGATCATG TGATAAGAGA GTCGGGCCTC AAGGCGATGT ATGAAGCGGA GAAGGGTGAG AAGGCGCGCT CGCGTGTCGA AAACCTGGAC GAACTCGTGA CCGCCGCTCG TACCTTTATC ATGCCCGAAG ACAGTGAGGA TATGGGCGAG CTCAATGCCT TCTTGTCCCA TGCAGCGCTT GAGGCGGGCG AAGGGCAGGC CGATGCCTTT ACCGATGCTG TTCAGCTGAT GACACTGCAT TCGGCCAAAG GGCTGGAGTT CCCTGTAGTA TTTATGTCCG GGGTCGAGGA GGGAATATTC CCGAGTCAGA TGGCCATGGA CGAAGGCGAC AGACTCGATG AAGAGCGACG CCTGTGCTAC GTAGGCATGA CCCGTGCGAT GGAGAAACTC TACATCACCT ACGCCGAAAC CCGCCGCATT TACGGCCGTG AAAACTTTGC CAGGCCATCA CGTTTTATCA AGGAGATCCC AACGGAGCAT GTTGAGGAGA TCCGTTTAAA GACACAAGTC ACTGCACCAC AAAGGGCAAA ACCCTCTTTC TCTCGAAGTA CGGTCGTTAA TGATACCGGC TTTAAGATAG GTCAAAGTGT GATGCACCAA AAGTTTGGTG AGGGCAAGGT TACCGGTACG GAAGGCAGTG GCGCCCAAGC CCGGGTACAA GTTAACTTTT TCGATGTTGG CAGCAAATGG CTTGTTGTCG CCTATGCGCG GCTCGAGACT TGTTAG
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Protein sequence | MDVSSLLDGL NDEQREAVGA PQSSMLVLAG AGSGKTRVLT HRIAWLMQVE QQSPYSILAV TFTNKAAAEM RERVEKVSGS NMGRMWIGTF HGLAHRLLRT HYKDANLPQT FQIIDSDDQL RLIKRILKSL HLDEKQYPPR QAQGYINGKK DQGLRPKHID AGGFPIEQNL LQIYQVYQES CDRAGLVDFA EILLRAHELW LNKPHVLQHY QDRFKNILVD EFQDTNAIQY AWIRVLAGDS ANVMIVGDDD QSIYGWRGAQ VENLHKFLVD FPKAETIRLE QNYRSTGHIL KASNELIANN PERLGKKLWT EDKDGEQISL YCAFNEMDEA RFIVGRINDW HDMGGDLSSC AILYRSNAQS RVLEEALLHK GLAYRIYGGL RFFERQEIKD AMSYLRLINN KDDDAAFERV VNTPARGIGG RTLDILRSTA RQQELTLWQT CLRALEEKLL SGRAANAVRG FMDLIVEMQQ DTDEMTLHRT TDHVIRESGL KAMYEAEKGE KARSRVENLD ELVTAARTFI MPEDSEDMGE LNAFLSHAAL EAGEGQADAF TDAVQLMTLH SAKGLEFPVV FMSGVEEGIF PSQMAMDEGD RLDEERRLCY VGMTRAMEKL YITYAETRRI YGRENFARPS RFIKEIPTEH VEEIRLKTQV TAPQRAKPSF SRSTVVNDTG FKIGQSVMHQ KFGEGKVTGT EGSGAQARVQ VNFFDVGSKW LVVAYARLET C
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