| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0453 |
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| Symbol | |
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| ID | 5612186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 566263 |
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| End bp | 567843 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931298 |
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| Product | EmrB/QacA family drug resistance transporter |
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| Protein accession | YP_001472194 |
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| Protein GI | 157373594 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCTA TCGTCAATGG CGCAGTTAAT CTCTCTATTG AGACAAAGCC ACAGGGTTAT
GAGCGTGGTA GTCGCCGAGC ATGGATCGCA GTATTTGGCG GGCTGATTGG TGCATTTATG
GCGATTCTGG ATATTCAGAT CACCAATGCT TCGATGAAAG AGATCCAAGG TAGTCTGGGT
GCTACCCTAG AGGAGGGATC ATGGATTGCG ACGGCTTATC TGGTCGCAGA GATGATAGCC
ATTCCTCTGT CTGGTTGGCT GAGTCAGGGC TTGTCGGTGA GGCGCTATCT GTTATGGACG
ACTTCGGCCT TTATCTTTGC TTCCTTATTG TGTTCAATCT CATGGAACCT GGAGTCGATG
ATCGCGTTTC GCGCGATGCA AGGCTTCTTC GGTGGCGCGC TTATTCCCTT GGCATTTCGT
TTAATACTCG AATTTCTTCC CGATGAAAAA CGCGCCGTGG GGATGGCCCT GTTTGGGATC
ACGGCAACTT TTGCTCCATC GATCGGGCCC ACGTTAGGAG GTTGGTTAAC CGAGCAGTTT
AGTTGGCATT ACCTGTTTTA CATCAATGTT CCACCTGGGC TTATCGTCAT GGCGATGCTG
GCCTATGGCT TGGAGAGAAA GGGCGTTATC TGGGAAAAAT TAAGGAATGT GGACCTGTCT
GGTATCATCA CCATGGCCAT AGGAATGGGC TGCTTAGAGG TGGTGCTGGA GGAGGGCAAC
CGTAAAGATT GGTTTGGATC TGCTCTCATT CAATATCTGT CGATTATTGC GGTGATAAAC
ATAGGTTTGT TTATCTATAT TCAGCTCAAA AAGAGTGAGC CTCTGGTCAA TCTAAGGTTG
CTGGGGCAGA GGGATTTTGC TCTCTCTACA GTGGCTTATT TCTTATTGGG GATGGCTCTG
TTTGGTGCTA TCTATATGAT CCCCCTCTAC CTGTCACAGA TCCATGATTA TAGCCCGCTC
GAAATTGGTG AGGTGATTAT GTGGATGGGG TTCCCACAGC TACTGGTTCT GCCGCTGGTG
CCTAAATTGA TGGAACGTTT CGATGGCCGT TATCTGGCGG CGTTTGGCTT CTTGATGTTC
TCGCTGAGCT ATTACATGAA CAGCCATATG ACCGCCGACT ATGCCGGTGA GCAGATGATT
GCATCACAGA TAGTTCGTGC TCTGGGACAG CCTTTTATAC TAGTGCCTAT TGGTATTATC
GCCACCATGC ATATCAAGCC CCATGAAAAT GCCTCGGCAT CGACGGTGCT CAATGTGATG
CGTAATTTAG GAGGTGCATT CGGTATCGCC TTAGTGTCCA CCCTGACCGA TAACCTATCC
AGAGAACATC TGGCTCATAT TAAAGAGACT CTGCCGGCCG TGAGCCCGAT AGCTAATGAT
TATCTGATGC AGACGGCGAA TGTTTTCACT CAGGCGGGGT CCGACCCTGT TACCGCTGCG
GCGCAAGCCA ATGCACTCTT GGGGCAGACT ATGACGCAGC AGGCCTATAT CAGTGCCTAT
AACGATGTCT TTTTTATCAT CTCATGCTTA TTGCTCATTG CCGTTGTCGC AGTGCTCTCG
ATAAGGAAAC GCAGCGATTA A
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| Protein sequence | MSAIVNGAVN LSIETKPQGY ERGSRRAWIA VFGGLIGAFM AILDIQITNA SMKEIQGSLG
ATLEEGSWIA TAYLVAEMIA IPLSGWLSQG LSVRRYLLWT TSAFIFASLL CSISWNLESM
IAFRAMQGFF GGALIPLAFR LILEFLPDEK RAVGMALFGI TATFAPSIGP TLGGWLTEQF
SWHYLFYINV PPGLIVMAML AYGLERKGVI WEKLRNVDLS GIITMAIGMG CLEVVLEEGN
RKDWFGSALI QYLSIIAVIN IGLFIYIQLK KSEPLVNLRL LGQRDFALST VAYFLLGMAL
FGAIYMIPLY LSQIHDYSPL EIGEVIMWMG FPQLLVLPLV PKLMERFDGR YLAAFGFLMF
SLSYYMNSHM TADYAGEQMI ASQIVRALGQ PFILVPIGII ATMHIKPHEN ASASTVLNVM
RNLGGAFGIA LVSTLTDNLS REHLAHIKET LPAVSPIAND YLMQTANVFT QAGSDPVTAA
AQANALLGQT MTQQAYISAY NDVFFIISCL LLIAVVAVLS IRKRSD
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