| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0444 |
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| Symbol | purH |
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| ID | 5612542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 553060 |
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| End bp | 554664 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931289 |
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| Product | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
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| Protein accession | YP_001472185 |
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| Protein GI | 157373585 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0138] AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) |
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| TIGRFAM ID | [TIGR00355] phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.23043 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATG CCAGACCCAT TCGTCGCGCG CTGTTAAGCG TTTCAGATAA AACCGGAATC
CTTGAGTTTG CAAAATCTCT ACACGCTCAA GGCGTAGAAC TGCTATCTAC TGGTGGCACC
GCCCGCCTTT TGGCTGATAA CGGTGTGCCT GTCATTGAAG TATCGGATCA TACCGGACAT
CCTGAAATTA TGGATGGTCG TGTTAAGACC CTGCACCCTA AAGTGCATGG CGGTATCTTA
GCGCGCCGCG GTATCGACGA GCTCGTCATG GAACAAAACA ACATCAAGCC TATCGACCTG
GTTGCCGTCA ACCTGTATCC ATTCGCAGAG ACTGTGGCGA AAGAGGGTTG TACTTTGGCC
GATGCAGTCG AAAATATCGA TATCGGCGGT CCAACTATGG TTCGCTCTAC GGCGAAAAAC
CATAAAGACA CCACCATCAT AGTTAACGCG AGTGATTACG ACCGCGTTAT TGTTGAGATG
AATGCTAATG AAGGCAGCAC GACGCTGGAG ACTCGCTTCG ATTTAGCTAT AGCCGCGTTC
GAGCACACCG CAGCATATGA CGGCATGATT GCTAATTACT TCGGCACTCA GGTACCGGCA
CACAGTAAAG ATGAGTGCCA TCACGACTCT AAGTTCCCGC GTACCTACAA TACTCAGCTG
GTGAAGAAAC AAGATCTGCG TTACGGCGAA AACAGCCACC AGACCGCGGC TTTCTATGTC
GATAGCCCCT CTTTTAACGG CCAGGGCGAT GAAGCTTCTG TCGCGAGCGC CATACAGCTA
CAGGGTAAGG CATTGTCTTA CAACAACATC GCCGATACCG ATTCAGCACT CGAGTGCGTG
AAAGAGTTCA GCGAACCGGC TTGTGTCATC GTTAAGCACG CTAACCCATG TGGTGTGGCT
ATAGGTAGTG ATCTTCTCGA TGCCTATAAC CGTGCTTTTA AAACCGATCC GACCTCGGCC
TTCGGTGGCA TTATCGCTTT CAATGGTGAG CTCGATGCGG CAACGGCCAG CGCGATTGTT
GAACGCCAAT TTGTTGAAGT CATTATCGCA CCGAAAGTGA GCCAAGCCGC TCGCGATATC
GTGGCTGCTA AAGCCAACCT TCGTCTTCTC GAATGTGGCG AGTGGAACAC TAAGACCACG
AGCTTAGATT ATAAGCGAGT CAACGGTGGG CTGCTGCTGC AAGACAGAGA TCAAGGTATG
GTCGGCCTGG ATGACGTGAA AGTGGTTTCT AAGCGTCAAC CCACCGCAGC CGAGATGAAA
GATCTGATGT TCTGCTGGAA AGTGGCTAAG TTCGTTAAAT CAAACGCCAT TGTTTACGCT
AAAGACAGCA TGACTATCGG CGTGGGCGCA GGCCAGATGA GTCGCGTATA CAGCGCGAAA
GTGGCTGGCA TTAAGGCTGC CGATGAAGGG CTGGAAGTTC AGGATTCAGT TATGGCGTCC
GATGCCTTCT TCCCATTCCG TGATGGTATC GATGCAGCCG CTGCTGCGGG TATCAGCTGT
ATCATCCAAC CTGGTGGTTC GATTCGTGAT GAAGAGATCA TTGCCGCGGC AGATGAGCAC
GGCATGGCGA TGGTATTCAC CGGAATGCGC CACTTCCGTC ATTAA
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| Protein sequence | MNNARPIRRA LLSVSDKTGI LEFAKSLHAQ GVELLSTGGT ARLLADNGVP VIEVSDHTGH
PEIMDGRVKT LHPKVHGGIL ARRGIDELVM EQNNIKPIDL VAVNLYPFAE TVAKEGCTLA
DAVENIDIGG PTMVRSTAKN HKDTTIIVNA SDYDRVIVEM NANEGSTTLE TRFDLAIAAF
EHTAAYDGMI ANYFGTQVPA HSKDECHHDS KFPRTYNTQL VKKQDLRYGE NSHQTAAFYV
DSPSFNGQGD EASVASAIQL QGKALSYNNI ADTDSALECV KEFSEPACVI VKHANPCGVA
IGSDLLDAYN RAFKTDPTSA FGGIIAFNGE LDAATASAIV ERQFVEVIIA PKVSQAARDI
VAAKANLRLL ECGEWNTKTT SLDYKRVNGG LLLQDRDQGM VGLDDVKVVS KRQPTAAEMK
DLMFCWKVAK FVKSNAIVYA KDSMTIGVGA GQMSRVYSAK VAGIKAADEG LEVQDSVMAS
DAFFPFRDGI DAAAAAGISC IIQPGGSIRD EEIIAAADEH GMAMVFTGMR HFRH
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