| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0434 |
|---|
| Symbol | |
|---|
| ID | 5611190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 529824 |
|---|
| End bp | 534281 |
|---|
| Gene Length | 4458 bp |
|---|
| Protein Length | 1485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640931279 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_001472175 |
|---|
| Protein GI | 157373575 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000165291 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATCG CTTACGTAAA AAAAATACTT TTTCCATTAT TATTACTCCT TACTTGCCTG
GCTCCCGTCA TGGCGGGCGA TTTAGTGTCT CGTGTTTTTA ATGAGCGAGA AGGCCTGACA
AACTCCCAGA TTAATGACAT CAGCTTCGAT GAATATGGCT TTGTATGGCT GGCCACCGAT
GAAGGCCTTT ATCGGTTAAG TAATTCTAAA GTTAGACGGA TCGACAAGGT TGAGTTCGAC
CTGCGTCTCT CCGATGAATA TATCAATATT GTTGAACCCT TGAGCCAAAA ACACCTGCTT
GTCAGTAACT ATTCTGAAAA CTATCTCTAT GACATCTTGG CCAATCGGTT TATCAAATTC
GGAAGTGATG AGCTGTTTCC TGAGTTTAAA GGCGAAAGCA TAGTCGCTCA GGTCAAGCGG
GCCGATGGTA GTTATCTCTT TCTCACCAGA GAGGGAGAGA TGCTTCAGTA TTCTTATCAG
CCATCTTCAT TAGAGAGGAT CATCTTTCTG CCAAATAATG CCGATGTTCT ATGGCATAAC
CTGGTTGCAC TCGACGATGG TCGTATAATG GTTGGTACCG AATATGAGTT GCAACTGCGA
GATAGCAAAG GACGACGGAT AGCGGTTTTA CCCTGGGAAG AGAAAAACGG ATTAATGAAG
TGGCTGTTTA AAGACTCTAA GGGAAGAGTT TGGTTAAGCT CGAGCAATGG ATTATATCGG
GTCGATGTTG ATAACTTACA GATTAATCCG GTGAAAGAGC TACCCTATTA TACGACCAAA
ATAGCTGAGG ATAATAATGG CGATCTTTGG ATCTCCAGCC ATATAGGGTT AATCAAGTGG
CCCCCTGGCT CTACAGAACA TAAGCTCTTT CAAAAGCAAT TAAAACAGAG CGCAGATATC
GATTATATTA ATGATATTGC CATAGATAAT ACAGGGGTTA TATGGGTCGG AGGCTCGGGA
GATGGCCTGG CCGTTCTTGC CGATGATCCT GGTTTTCTTA TCGACAGGTT CACTATGTCT
GAGCCATATC ATCTCAGCAA TGAGATGATA TGGACCATAT TTGCGGAAGA TGAAAATATT
TGGCTAGGCA CCGATAATGG TCTTATCGTT ATCGATAAAA AAAATAAACA ATCTAGGACG
TTAGTTCCTG ATGGTATCGA GTTAAATGAC AGTATCTATA AGATTGATCC TTTAGATAGT
CATCATCTGT TACTTTCAAC GACAACGGGT CTGTTTGTTG TAGATAAGCG TAATTTTACT
TCTCAACGTT TTGCCCAATG GGCTCAGGGA GATTATTCCT TAGAGCACAA AGTGGTATAT
ACAAGTTATA ACGATCCCTT GATAGAGGGA CGTTGGTGGT TTCTTACCAT GACCGGCCTC
TATTTTTGGG AGCCGGGAAT GCTTAACCCT CAAGAGAGAC TAATATCCGG AGAAAGGACA
CAAGCGGGCA TACGAGATCT ACGTGCGCTA TTTCGCGATG AGTCTGGTCG ATTATGGATT
GGCGGAGGCG ACTTCTTTGG TTTTCTCGAT AGCGAAGGCC AATTTCATTC CCGAATAAAT
ATTTTTAGTG ACGAAGATAT CGATATAGAA GTTAACTATA TTAAGCAGGT TGAGTCGGGG
GTATTTTGGC TGGGCACTTC ACCCAGTGGC CTGTTCGAAT ATGCTCCTGC ATCGGGTCGA
GTGAAAGCAT TAGATAAGAA GTGGTTGACT GATTGCTCCT CTGTATTTTT TATTCATCAA
ACGGATAAAC ACCGTGTTAT TGGTTGCCCC TACTCGATAA TCCGACAGGA GATTGAGAGT
AACAATATTC TTGTTATCGA CGAAGACGAC GGGCTTATTG GTGACGAGCT GAACGACGGT
GCCTATTTTT ATGACCCCGC TTATGGACTC TACCTAGGTA CGCCCGATGG GGCTATGGCA
CTGAATATCG ATGACTTGAG TAATCGCATC CAAAGAGACA AGGTGTTTCT GGAAGCTGTT
TCGGTGTTTT ATGACGATGA CACTCAAATC GATCTTATTC CACAGGCCGA TACGGTGATT
TTACCTGGTG CGAGACTGAT TAGTTTCCAG GTTACCAGCC TGGATTATCT CGATGATACG
CCTATGACAT TGCAATATAG GTTGCGCCGA GAAGGAGACC GCAGCGAGAG TCACTACCTA
TTGTTGGAAG GGCAGTCTCA ACTGAATATC ACCGGTTTAT CATCCGGGAA ATATCACTTG
GATATTTTAA GCCAAGAGAA TGGTATCTGG TCAAAGGTAC CCCACACCTT TGAATTTAGG
GTTAAACAAT TCTGGTGGCA GACTCAATGG TTCAATGGAT TGATATTATT CACCGTTCTC
TGTATTGGTA TAGGAGTGAT TGTTTACCGG CAGCGTCAGG TGAAAGCCTT TAAGCTTGTT
AACAGTGCCT TGGTTGAAAG TGAGGATAGA CTACGCCAAT CACTCAAGGG AAGCGATTCA
GAGCTTTGGG AGTGGCGACA TGATACACAG ATGTTTAGTC TGGAGAATCG AGGTGCGAAA
CGGAAAGAAG ATCGGAAAAA TAAGCTACTA AAGCTGAAAG ATTTTCCGGT TCATCGTGAT
GAAAAAGATA AGGTGCTGGC TTCATGGAAT AATATGATCG AAGGTTATAG CGATCGATTC
GATGTCGAGT ATCGCTACCG TCGAGAAGAT AAGACCTGGG GATGGACTAG GGTGAGAGGC
AGGCCGGTAG AGCTGGATCC TGCATCGGGA AAAATTTTAC GCGTAGCGGG GATATATTCA
GACATCACGG CTCAACGTCA ACTCGAAGAC GATGTTAAAT TGTTAGCCCA GGCATTCGGT
AACACCTCTG AAGGGGTGTT GATTTTAGAT GCGAGTGAGA GGATAAAGGT CTCCAATAAG
GCGGCTCAGA CCATCATAGG CTCAGATGCG AGAGTGTTGA CGCATAAGTA TTTCTCCGAT
CTTATGGTGG CTAAAGAGGG GCGTTCAGAT GAAATTGCGC ACCTTCTGGA TCAAGGCGTG
TCATGGACGG GAGAGCGTGA GTTTGTATGT ACCAACGGTA GTAGCTGTCC GGTATGGCTT
AATGTATCGA CCATGCTCGG TGGTAAGGGG GATATCACCC ATTATGTCGC AGTATTCTCC
GATATCACAG AACGAAAGCG GACAGAAGCG GACCTGCGTC GCCTGGCTAA TTATGATGTA
CTAACGGGAC TCCCCAATCG CTCTCTATTT TCTACCCGTT TAGCTCAATC TATTCATCGT
GCAGAACATA GCGGTGAAAA GTTGGCCCTG ATCTTCCTCG ATCTGGATCG GTTTAAGCAT
GTTAATGACT CATACGGCCA TAGTATGGGA GATGCACTGC TGGTTGAAGC CGCAAGTAGG
CTGCAATCGT GTATCTCAGA GGAGCACACC TTATGCCGCT TTGGTGGTGA TGAATTTGTG
CTTCTAATCA GAGACGCCGA CAATATTGAT AAGATAAATC ATGTCTGCAC CGAGTTACTG
GTACAAATTG AGGCTCCATT TGAGCTATTC GGCCGAGAAT TTTTTATCTC TACGAGTATT
GGTGTCAGTT TATGGCCCGA TGATACGAGG CAGCCTGAGG TCTTAATTAA AAATGCCGAT
CAGGCTATGT ATCATGCGAA GGAGGAGGGC AGAGGGAATT TCCAATACTT CTCTTCGGAG
CGTAATGCAG AAGCTTTATA CCACCTTCGT CTGGAGGGAG AGCTGCGCAA AGCGATCGAA
CGCGATGAAT TTGAGCTTCA TTATCAACCT CAGGTCGATA TCCTCAGGGG TGATAAATTA
ATTGGTATGG AGGCTCTGCT GCGCTGGAGG CATCATAAAG ATGGGTTAGT TCGGACGGAT
GTCTTTATTA AGGTGGCCGA GTCATGTGGA TTAATTATAG ATATCGATCG CTGGGTGCTA
CGTCAGGCTT GTGTTCAGGG GGCGCTCTGG GCCAACTCAT ATAAAGAAAA TTTTAAGTTA
TCAGTTAATA TCTCTGCCGT TCATTTTCGT CAGCCCGATT TTATTGATGG CGTAAGGTCT
ATTTTGGAAG AGACTAAGAT CCCCCCATCG GCATTAGGCT TTGAGATCAC CGAGGGGGTC
TTGATGAAGG AGCTACATAT TGCAAAAGAT CATCTTAGGG ATCTAAGAGA GCTTGGAATT
GATGTGGCTA TTGATGACTT TGGTACCGGT TACTCATCGC TTGCTTACCT ACGTCACTTT
GATGTCGATA CATTAAAGAT CGATCGCTCT TTCCTCATCG ATATCGCGAC CAATGAGACC
GATCAGGCCA TCGCGAGCAG TATCATTGAG CTAGCCAGAA ACTTAAAATT GAATGTGGTA
GCCGAAGGTG TGGAAACCAA AGATCAACTC GAGCAAGTAT TTAGCCGGGG TTGTTATGTT
ATTCAAGGTT ATTACTTCTC TAAACCGTTA ACGGTAAGCG ATATGGAGTC CTATATGGGG
CTAAAAAAAG CGGAGTGA
|
|---|
| Protein sequence | MQIAYVKKIL FPLLLLLTCL APVMAGDLVS RVFNEREGLT NSQINDISFD EYGFVWLATD
EGLYRLSNSK VRRIDKVEFD LRLSDEYINI VEPLSQKHLL VSNYSENYLY DILANRFIKF
GSDELFPEFK GESIVAQVKR ADGSYLFLTR EGEMLQYSYQ PSSLERIIFL PNNADVLWHN
LVALDDGRIM VGTEYELQLR DSKGRRIAVL PWEEKNGLMK WLFKDSKGRV WLSSSNGLYR
VDVDNLQINP VKELPYYTTK IAEDNNGDLW ISSHIGLIKW PPGSTEHKLF QKQLKQSADI
DYINDIAIDN TGVIWVGGSG DGLAVLADDP GFLIDRFTMS EPYHLSNEMI WTIFAEDENI
WLGTDNGLIV IDKKNKQSRT LVPDGIELND SIYKIDPLDS HHLLLSTTTG LFVVDKRNFT
SQRFAQWAQG DYSLEHKVVY TSYNDPLIEG RWWFLTMTGL YFWEPGMLNP QERLISGERT
QAGIRDLRAL FRDESGRLWI GGGDFFGFLD SEGQFHSRIN IFSDEDIDIE VNYIKQVESG
VFWLGTSPSG LFEYAPASGR VKALDKKWLT DCSSVFFIHQ TDKHRVIGCP YSIIRQEIES
NNILVIDEDD GLIGDELNDG AYFYDPAYGL YLGTPDGAMA LNIDDLSNRI QRDKVFLEAV
SVFYDDDTQI DLIPQADTVI LPGARLISFQ VTSLDYLDDT PMTLQYRLRR EGDRSESHYL
LLEGQSQLNI TGLSSGKYHL DILSQENGIW SKVPHTFEFR VKQFWWQTQW FNGLILFTVL
CIGIGVIVYR QRQVKAFKLV NSALVESEDR LRQSLKGSDS ELWEWRHDTQ MFSLENRGAK
RKEDRKNKLL KLKDFPVHRD EKDKVLASWN NMIEGYSDRF DVEYRYRRED KTWGWTRVRG
RPVELDPASG KILRVAGIYS DITAQRQLED DVKLLAQAFG NTSEGVLILD ASERIKVSNK
AAQTIIGSDA RVLTHKYFSD LMVAKEGRSD EIAHLLDQGV SWTGEREFVC TNGSSCPVWL
NVSTMLGGKG DITHYVAVFS DITERKRTEA DLRRLANYDV LTGLPNRSLF STRLAQSIHR
AEHSGEKLAL IFLDLDRFKH VNDSYGHSMG DALLVEAASR LQSCISEEHT LCRFGGDEFV
LLIRDADNID KINHVCTELL VQIEAPFELF GREFFISTSI GVSLWPDDTR QPEVLIKNAD
QAMYHAKEEG RGNFQYFSSE RNAEALYHLR LEGELRKAIE RDEFELHYQP QVDILRGDKL
IGMEALLRWR HHKDGLVRTD VFIKVAESCG LIIDIDRWVL RQACVQGALW ANSYKENFKL
SVNISAVHFR QPDFIDGVRS ILEETKIPPS ALGFEITEGV LMKELHIAKD HLRDLRELGI
DVAIDDFGTG YSSLAYLRHF DVDTLKIDRS FLIDIATNET DQAIASSIIE LARNLKLNVV
AEGVETKDQL EQVFSRGCYV IQGYYFSKPL TVSDMESYMG LKKAE
|
|---|
| |