| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0425 |
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| Symbol | |
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| ID | 5611222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 516774 |
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| End bp | 518483 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931270 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_001472166 |
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| Protein GI | 157373566 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00261577 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000552387 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCCAACGA CTGGGTTACA CTTAGGATTA TCAACCCTTT TCATTCGCAA ACAACTGCTC
AGCGAAGAGC AGATAGCATC GGCGATAGCC AAATCTCGTC AATCGAAGCG ACCTCTAGTT
TCAACCATAA TCTCAGAAAA GCTTATCTCA GGGCGAGAAA TTGCCGAGTT ATGCTATGAA
GAGTACGGTA CTCCACTGCT GGATCTCGAT GAATTTGATA TTGCCAGTAT CCCGGAAAAC
TTTCTCAACA AAAAGCTAAT TGAAAAACAC AAGTGCCTGC CACTTTTTAA GCGTGGCAAC
CGCCTCTATA TTGGCACCTC AGATCCGACC AATATCGCAG CACTGGAGGA TTTTCAATTT
AGCGCAGGCC TGCACGCCGA AGCCATTTTG GTTGAAGACG ACAAGTTAAC CAAGGCTCTG
GAAAAGGTAC TCGAAGAGGA CATTTCGGCC CTCGATATCG GCGACATAGA TGAAGACTCT
TTAGCTGGCA TAGAGATAGA GGACACCAGT AAACGCGATG ACGATCAGAA TGGTGACAGC
TCCGATGATG CCCCGATCGT TATCTATATC AATAAAATTT TGACCGATGC GATACGAAAA
GGCGCATCGG ATCTTCATTT CGAGCCCTAT GAGAAACGAT ATCGAATTCG CTTTCGCATC
GATGGCATCT TACACGAAGT ATCAGAGCCT CCGGTAAATC TCTCTAACCG TATTTCGGCT
CGCCTCAAGG TGATGTCAAA GCTGGATATC GCCGAGCGCC GCGTCCCCCA AGATGGCCGC
ATAAAGATGA AGCTATCTCG CACCAAATCA ATCGATTTTC GTGTCAGTAC GCTGCCAACA
ATTTGGGGGG AGAAGATCGT AATGCGTATC CTGGACTCAT CCTCTGCTCA ACTAGGCATC
GAGAAGCTGG GTTACGAGGA TGATCAGCGA GAGCTTTACG AGGAGATGCT GGCAAAACCA
CAAGGCATGA TCTTAGTGAC TGGCCCAACG GGTTCGGGTA AGACGGTATC TCTCTACACC
GGACTCAACA TCCTTAACAC CGAAGAGCGT AATATCTCAA CGGCAGAGGA TCCGGTAGAG
ATAAACTTAG AAGGTGTCAA TCAGGTACAT ATCAATCTAA AAGCCGGACT CACCTTCGCA
TCGGCCCTGC GTTCGTTCCT CCGTCAAGAT CCCGATGTCG TCATGGTGGG TGAGATCCGA
GACTTAGAGA CAGCCGAAAT AGCCATTAAG GCGGCACAAA CCGGTCACTT AGTGCTCTCG
ACACTGCATA CTAACTCGGC GGCAGAGACT CTCACTCGTC TCATTAATAT GGGCGTGCCC
GGGTACAATA TTGCCAGCTC GGTCAACCTG ATTATCGCCC AACGTCTGGC TCGTCGTTTA
TGTCCAGAGT GTAAACAACC TGAAGAGGTG CCCAAACACG AATTGGAAAA ACTGGGGTTT
AATCCAACTC ATATCGAAGC TGGCATCACA GTCTATAAGC CAATAGGCTG CGATCTCTGC
TCAGGTGGTT ATAAAGGCCG TGTCGGTATC TATGAAGTGA TGAGAATGTC AGATGAGATA
GCCCGTACTA TTATGGAGGG AGGTAACTCC TTACAAATAG CCAACCAGGC AAAAGAGCAG
GGGATGAGAG ATCTCAGGGG TTCCGGGTTA TTAAAAGTCA TTCAAGGTGT TACCAGCATT
GCAGAGATAA ATCGTGTAAC CAGTTTTTAA
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| Protein sequence | MPTTGLHLGL STLFIRKQLL SEEQIASAIA KSRQSKRPLV STIISEKLIS GREIAELCYE
EYGTPLLDLD EFDIASIPEN FLNKKLIEKH KCLPLFKRGN RLYIGTSDPT NIAALEDFQF
SAGLHAEAIL VEDDKLTKAL EKVLEEDISA LDIGDIDEDS LAGIEIEDTS KRDDDQNGDS
SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PVNLSNRISA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT IWGEKIVMRI LDSSSAQLGI
EKLGYEDDQR ELYEEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTEER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CPECKQPEEV PKHELEKLGF
NPTHIEAGIT VYKPIGCDLC SGGYKGRVGI YEVMRMSDEI ARTIMEGGNS LQIANQAKEQ
GMRDLRGSGL LKVIQGVTSI AEINRVTSF
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