| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0424 |
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| Symbol | |
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| ID | 5611221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 515443 |
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| End bp | 516708 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931269 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001472165 |
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| Protein GI | 157373565 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000440885 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAACGG CGACAGCAGG CAAAGCAAAA AAATCAAAGA AAAAGAGTGC TAAAGCCCAA
CCTAAGGTTT TCACCTTCGA GTGGAAGGGA GTTAATCGCG ATGGAAAAAA AACCTCTGGC
GAGTTAAGAG GAACCTCCGC AATAGAGATA AAGAGTCAGC TAAAACTCCA AGGCGTTAAA
CCAAAAGCTG TCCGTAAAAA AGCAAACTCA CTCTTCAAGA GTGAAAAGAA AATTACAGCC
ATGGACATTG CTATGATGAC CAGGCAGGTT GCCACCATGC TCTCAGCAGG TGTTCCGATT
GTCACAACGC TAGAATTACT GGGTCGTGGC CATGAAAAGC CTAAAATGCG AGAGTTACTA
GCGACGATTG TAGGTGATGT CCAATCAGGT ATCCCCCTTT CTGATTCACT CAAACCCCAT
AGACAATATT TCGATGATCT ATATGTCGAT TTGGTTGCAG CGGGTGAACA TTCTGGCTCA
CTCGATGCCG TATTTGATCG CATTGCCACC TACCGAGAGA AAGCCGAGGC GTTAAAGTCA
AAAATCAAGA AAGCCATGTT TTACCCCGCT GCAGTTGTAG TGGTTGCGAT AGCGGTGACC
GCCCTACTTT TACTTTTTGT TGTGCCTCAG TTTGAAGAGA TCTTTCAAGG CTTTGGCGCG
GAATTACCTG CCTTTACGCA GATGATTGTT GATATTTCTC GATGGTTGCA AGCCTCTTGG
TATATTTTTG TTATAGCGAT AATTATTGCA GTATTCAGCT TCAAACGCGC TCATCTACAC
TCACAGAGCT TTAGGAACAG GGTCGATGAA TTTGTATTAA AAATCCCTGC TATAGGCGAT
ATACTCGATA AAGGTGCTAT GGCTCGCTTT GCTAGAACTC TCTCAACAAC TTTCGCAGCG
GGAGTTCCGC TAATTGACGG CTTAGAATCC TCTGCGGGAG CTTCAGGTAA CTATGTTTAT
CGAAGCGCTC TACTTAAAGT GCGCCAAGAA GTGATGGCAG GTATGCAGAT GAATGTTGCT
ATGCGCACAA CAGGTCTGTT TCCTGACATG CTGATCCAGA TGGTAATGAT CGGTGAAGAG
TCTGGCGGAC TCGATGAGAT GCTCAATAAA GTCGCTAACA TCTATGAGAT GCAGGTCGAT
GATGCCGTCG ATGGCCTTTC CAGCTTAATT GAGCCTATCA TGATGGTTGT CATCGGCACA
CTCGTTGGCG GCCTGATTGT CGGCATGTAT CTACCAATCT TCCAAATGGG TAATGTGGTA
GGCTAG
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| Protein sequence | MATATAGKAK KSKKKSAKAQ PKVFTFEWKG VNRDGKKTSG ELRGTSAIEI KSQLKLQGVK
PKAVRKKANS LFKSEKKITA MDIAMMTRQV ATMLSAGVPI VTTLELLGRG HEKPKMRELL
ATIVGDVQSG IPLSDSLKPH RQYFDDLYVD LVAAGEHSGS LDAVFDRIAT YREKAEALKS
KIKKAMFYPA AVVVVAIAVT ALLLLFVVPQ FEEIFQGFGA ELPAFTQMIV DISRWLQASW
YIFVIAIIIA VFSFKRAHLH SQSFRNRVDE FVLKIPAIGD ILDKGAMARF ARTLSTTFAA
GVPLIDGLES SAGASGNYVY RSALLKVRQE VMAGMQMNVA MRTTGLFPDM LIQMVMIGEE
SGGLDEMLNK VANIYEMQVD DAVDGLSSLI EPIMMVVIGT LVGGLIVGMY LPIFQMGNVV
G
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