| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0408 |
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| Symbol | murD |
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| ID | 5611428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 476911 |
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| End bp | 478242 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931240 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001472149 |
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| Protein GI | 157373549 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00165935 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTTAACC ACAAGTCGCA CCTGATATTG GGATTGGGAG CCACAGGCCT CTCGGTTGTG
CGTTATCTAC ATGGCCTGGG GATCACTCCC TTGGTTATGG ATAGTCGTCA GCAACCTCCT
GGTGCGGATA AGTTGGCGGC AGAGTTTCCC GATGTCGAGT TGATCAGTGG CGGCTTCGAC
TGTCGATATC TGGTGCAGGC GACTCAGATC ATTGTCAGTC CGGGCATCGC TATCGATACA
CCGGAAATCC GAGCCGCGAT AGATATGGAT ATTGAGGTTA TCGGCGATGT CGAGCTATTT
GCCAGAGCGG TCAAAGAGCG GGATGCTTGC GTTATCGGTA TCACTGGATC GAATGGAAAA
TCTACAGTAA CGACCTTAGT GGCTGAGATG GCTAAGGCTG CGGGTATCAA TTATGCCGTT
GGTGGCAATA TTGGTATTCC TGTTTTAGAT CTACTCCAGA GCGATATTGA GCTGTATGTA
TTGGAGCTGT CGAGTTTTCA ATTAGAAACA ACTCACAGCT TGAATTGTAT TTCGGCTACT
TGCCTTAATA TCAGTGAAGA TCATATGGAT AGATATAGTG ATATCGAAGC ATATCGTCAG
GCTAAGTTGA GGTTATATTC ACAAACCCGG TTCGCTCTGT TTAATCGAGA AGATGAGCTG
ACTAAACCCA AAGATCCGAT GAACCAGAAC AGTTTTGGTT TATCTCTGCC CGACAATGAT
GAGTGGGGAG TCTGCGAGGG CAAGATAGTA CACGGTAGTG TAGAGGTTAT CAGTCTTCAG
GATGTTGCTC TGGTCGGCAG CCATAATCAT GCCAATTTGA TTGCCGCTAT GGCGCTTGCT
TATCAAGCCG GTATAGAAAA GGCTGCAATG GTTGAGGTCG CTTCATCGTT TACCGGGCTC
GAGCATAGGT TTGAGATGGT CGTTAACCGA AACGGTGTTG CTTACATTAA CGACTCTAAG
GCGACAAATG TCGGTGCTAC TGTGGCGGCT ATCGAGGGGA TCAGTGAACA CCTGGGTGAT
ATCATTTTAA TTGCCGGTGG TGATGGAAAA GGAGCGGATT TCAAACCTTT GGTGCCAGTG
TTAAAGGCGG TGAGCCATCT CATTACATTA GGTAAAGATG GAGATAAGAT CGCCGCCCTG
TCCGACAGCT CGATTAGGGT TGATTCTATG GCTGATGCGG TCAATAAAGC CGCACAGTTA
GCCATAGCTG GTGATATTGT TTTGTTGTCT CCGGCGTGTG CCAGTTTGGA TATGTACAAG
AATTTTATGG AAAGAGGCGA TGATTTTCGC CGGTTAGCCG AAGGGTTAAG CGCCGAGGCA
TTAAATGCGT AG
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| Protein sequence | MVNHKSHLIL GLGATGLSVV RYLHGLGITP LVMDSRQQPP GADKLAAEFP DVELISGGFD
CRYLVQATQI IVSPGIAIDT PEIRAAIDMD IEVIGDVELF ARAVKERDAC VIGITGSNGK
STVTTLVAEM AKAAGINYAV GGNIGIPVLD LLQSDIELYV LELSSFQLET THSLNCISAT
CLNISEDHMD RYSDIEAYRQ AKLRLYSQTR FALFNREDEL TKPKDPMNQN SFGLSLPDND
EWGVCEGKIV HGSVEVISLQ DVALVGSHNH ANLIAAMALA YQAGIEKAAM VEVASSFTGL
EHRFEMVVNR NGVAYINDSK ATNVGATVAA IEGISEHLGD IILIAGGDGK GADFKPLVPV
LKAVSHLITL GKDGDKIAAL SDSSIRVDSM ADAVNKAAQL AIAGDIVLLS PACASLDMYK
NFMERGDDFR RLAEGLSAEA LNA
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