| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0395 |
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| Symbol | |
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| ID | 5612670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 462332 |
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| End bp | 463732 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931227 |
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| Product | isopropylmalate isomerase large subunit |
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| Protein accession | YP_001472136 |
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| Protein GI | 157373536 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
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| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000243407 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAAGA CATTATATGA AAAAGTATGG GACAGCCATG TGGTGGTTGA AAACGAAGGT
CAGGCGCCGT TAATCTATGT GGACAGACAT CTGGTTCATG AGGTGACGTC TCCACAGGCA
TTCAGTGGTC TGAAGGTCGC GGGGCGCAAA CTGCGTGCAC CGGAAAAAAC CTTCGCCACC
ATGGATCACA ACACGTCGAC TAAGAGCGCA AGCCTCGATG CATTGAGCCC CATGGCCCGT
ATCCAGGTTG AAACCCTGCA GGATAACTGC AAAGAGTTTG GTGTTCGCCT GTATGACATT
CATCATAAAA ACCAAGGTAT CGTCCATGTG ATGGGTCCTG AGCTTGGGAT CACCCTGCCC
GGCACGGTTA TCGTGTGTGG TGATTCTCAC ACCGCAACCC ATGGCGCATT TGGTGCCTTG
GCGTTCGGTA TCGGCACCTC AGAAGTCGAG CATGTGATGG CGACGCAGAC ATTGCGTCAA
AACAAAGCTA AGACGATGAA AATCGAGGTG CGTGGTCACG TCGCCGCTGG GATTACTGCT
AAAGATATCG TGCTGGCAAT TATAGGTAAG ATTGGCATGG ATGGCGGTAC GGGCTATGTG
GTCGAATTCT GTGGTGAGGC GATTGAAGCA CTTTCTATGG AAGGTCGCAT GACGGTGTGT
AATATGGCTA TCGAAATGGG TGCCAAAGCG GGCATGGTCG CTCCGGATGG GATCACTGCC
GAGTACCTTA AGGGTCGTGA ATTTGCGCCT AAGGGAGAGT CATGGGAGCA AGCTATAGCC
GCATGGGCCG AGCTTAAAAC AGATGAAGAT GCCATATTCG ATGCAAGCGT TGTGCTTGAA
GCATCAGATA TCGCTCCTCA GCTCACCTGG GGAACGAATC CGGGTCAAGT CGTCGCTATC
GACGGTTTGG TACCAAACCC TGAAGATGAG TCTAATGCCA CGGTTAAGGC CAGCATAGAG
AAGGCGCTGG AATATGTGGC GCTTAGTGCA GGAACTTGTA TGACTGATGT GAGCATTAAT
AAGGTCTTTA TCGGCTCATG TACTAACTCT CGTATCGAAG ATCTGCGTGA TGCGGCGCTA
CATGCCAAAG GCCGTAAAGT GGCCGCGGGT GTCACCGCGA TAGTTGTGCC TGGATCTGGT
TTAGTGAAGG AGCAGGCAGA AGCTGAAGGG TTAGATAAGA TCTTCCTCGA GGCAGGGTTT
GAATGGCGTC TGCCGGGTTG TTCTATGTGC TTAGCTATGA ATGATGACAG ATTAGAAGCC
GGTGATCGCT GCGCCTCTAC CAGTAATCGT AATTTCGAAG GGCGCCAGGG ACGAGGCAGT
CGTACTCATC TCGTGAGCCC CGCTATGGCT GCAGCTGCGG CAGTAGCCGG TCATTTTGTC
GATATTCGTA AAGCATACTA G
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| Protein sequence | MAKTLYEKVW DSHVVVENEG QAPLIYVDRH LVHEVTSPQA FSGLKVAGRK LRAPEKTFAT
MDHNTSTKSA SLDALSPMAR IQVETLQDNC KEFGVRLYDI HHKNQGIVHV MGPELGITLP
GTVIVCGDSH TATHGAFGAL AFGIGTSEVE HVMATQTLRQ NKAKTMKIEV RGHVAAGITA
KDIVLAIIGK IGMDGGTGYV VEFCGEAIEA LSMEGRMTVC NMAIEMGAKA GMVAPDGITA
EYLKGREFAP KGESWEQAIA AWAELKTDED AIFDASVVLE ASDIAPQLTW GTNPGQVVAI
DGLVPNPEDE SNATVKASIE KALEYVALSA GTCMTDVSIN KVFIGSCTNS RIEDLRDAAL
HAKGRKVAAG VTAIVVPGSG LVKEQAEAEG LDKIFLEAGF EWRLPGCSMC LAMNDDRLEA
GDRCASTSNR NFEGRQGRGS RTHLVSPAMA AAAAVAGHFV DIRKAY
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