| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0383 |
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| Symbol | dut |
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| ID | 5612711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 448601 |
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| End bp | 449059 |
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| Gene Length | 459 bp |
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| Protein Length | 152 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931215 |
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| Product | deoxyuridine 5'-triphosphate nucleotidohydrolase |
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| Protein accession | YP_001472124 |
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| Protein GI | 157373524 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0756] dUTPase |
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| TIGRFAM ID | [TIGR00576] deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000980059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000523361 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAAGACTC CTATAGAAGT AAAAATCCTC GACTCACGCA TTGGTTCTCA ATTTCCTCTA
CCCGCCTATG CGACACCCGG TAGTGCCGGC ATGGACCTTA GGGCCATGCT CGAAACCAGT
ATCCAGGTGG CTCCCGGAGA AACGATTCTA ATTCCAACAG GCATCTCAAT TCATGTCGCA
GATTCAAGCC TTGCTGCTGT GATACTCCCC CGCTCAGGCC TGGGCCATAA ACACGGCATA
GTGTTAGGTA ACTTGGTTGG CCTTATCGAT TCTGATTATC AAGGACCACT GATGGTCTCA
TGCTGGAACA GAGGCAGTGA GCCATTCACC TTAGAGATAG GAGACAGGTT GGCTCAACTC
GTTTTTGTTC CGGTCGTTCA GGCCGAATTT AAACTCGTTG ATGAATTTGA TAACTCATCT
CGTGGTGAAG GCGGCTTCGG TCATTCTGGC ACCAAATAA
|
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| Protein sequence | MKTPIEVKIL DSRIGSQFPL PAYATPGSAG MDLRAMLETS IQVAPGETIL IPTGISIHVA
DSSLAAVILP RSGLGHKHGI VLGNLVGLID SDYQGPLMVS CWNRGSEPFT LEIGDRLAQL
VFVPVVQAEF KLVDEFDNSS RGEGGFGHSG TK
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