| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0351 |
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| Symbol | |
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| ID | 5612887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 408323 |
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| End bp | 410329 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931183 |
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| Product | outer membrane protein |
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| Protein accession | YP_001472092 |
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| Protein GI | 157373492 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.132929 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTCA AATTTAACCT CATCACGTTA TCACTTCTCG CTATATCGGG CGCGGTAACG
GGCTCTGCAA TGGCGGCTGA CTTTGGCGTG AACAGGGCCA ATACCAGTAC AGTTAAACAG
GAAACCTTTC AGTGTAAGCG CTGCCCTCAA GTCGATGGCT ATACCGGCAC AGTCGGTATC
AATGCCGCCT ATATTGAGAG TGACGACATT CACTCCGGCA ATGCTTTCGG TACCGACAAA
GACGGCGCTA ATGCCAGTTT GGATGCCGAC CTCAATTACC GAAACGGAGC AGGCTATAAG
GCCAGGTTCC AGGCACACCA GCTAGGTCTG GATAACGGCT TCGCTCACCT TGAAGCGGGC
AAATCCGGCC GCTATGAGAT AACTGCGGAT TATCAGCAGC TGACAAGTTA TCAGTCAGGC
GATGCACGCA GCCAGTTATG GTACAAAGAT GGCGTGTTGA CCCCGAGCGA ACATACTCAG
ACCCAAGAGC TCTCCCTGCA GAGAAACAAA GCTGGCTTGG GTCTGAGTTA TGGCCGGGAT
TTCTATCAGG CTTATATACG TTACGACCAC GAGAATAAAA CCGGTTACCA GAGCAGTAGC
ATTGTCACTC CCCGTCCGGT TAATTTCGGT CTGCCTGTCG ATGCCAACAC AGATAACCTC
ACCGCGGGGC TGTCTCTGTC AGGCGATAAC TGGGCTACCG ATCTCAATTA CTTCGTGAGT
CAGTATAAGA ACGATATCGG CGCCTTAAGT CTCCCCTACC TGTATGACGT CTTTGCACCG
ACTCCTGACA ATGAAGCTCA TCAAATTAGC CTGTCGGGTC AATACCAGTT GAGCCGCACC
GTCATGAGCG GTCGTCTGGC GTCAGGCAAG ATGATCCAGG ACGATGATTT GATCCAGATG
TCCGGTAATC CAATACAAAA CTGGGACGGT GAGGTCGAGA CTTTAGACGG CAAGCTGTCA
GTCACCTCGC TTTTGAGTAA TAAGCTCAGA CTCGGCGGCA GTGTCGATTA CAGCAAGCGC
GACAACAAGG GCTCGGTATG GGAGTTCGCT CAATATGAAG TTAACGGGAT CACGGGCGCA
TTTAAACAAA ATGTTCCTTT AGACACCGAA CGTCGCGGTC TCAAGGTTAA TGCCAGTTAT
CGCTTCAGCA GCGACTATCG CCTGCAGGCC GGCTACGACC GCAAGGAGAT GGAGCGCAGC
CATGGCGACC GTGAGCAGAC AAATGATGAC GTGCTATGGG CCAAGCTCAA CGTCCGCGCA
TTGGATGATA TCAAGCTTAA GTTCAAGGCC AGTCTGGATA ACCGTGGCGG CAGCGAATAT
CAAACCAGCG AACTGACCTC ATCCGAAACT AACCCCTTGC TACGGAAATA CTACCTGGCT
GACAGAAAGC GTACCGCCTT CGAAGCCAAA TTTAATCACA CTCCGACTTC GTGGCTCAGT
CTGGATATGA CCGCCCGCTA CGCCAAAGAT GATTACGACA AGACTCAACT GGGTCTGACC
GGATCTGAAG ATTACGGCTA TGACATCAAC CTTGGGCTGC AGCTCGATGT GCATCTGTCT
GGCTATGCCT TTGCCGGTCA GCAGTGGATC GACTCCAATC AAACTGGCAG CCAGAGTTTC
TCTGCCCCGG ATTGGTCCGC CGATATCGAA GATGAGTTTA TCAACCTGGG CGCTGGATTC
ACCTATACAG GGCTACTGGA AGACAAGCTC ACTCTGGGCG GCGATTACCT ATTCGCAAAC
TCCACCAGCG ACACGTTAGT CATCTATGAC GTCGTCACGC CGCAAGGAGA TTACTACTCT
TTCAACCATA GTCTCAAGCT ACATGCGAAC TACGCATTGA GTGAAGAGAT GGCGTTAAAA
CTGGCTTACC AGTATGAGCG CTATTACGAC ACCGATTACG CGCAAATTGA TGTCGATACA
GTTCCGGGAC TGACCACCTT AGGCGACCTG AACCATAACT ATAACGCGCA CCAAGTGATG
TTGTCGTTTA GCTACCAGCT GCGCTAA
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| Protein sequence | MRFKFNLITL SLLAISGAVT GSAMAADFGV NRANTSTVKQ ETFQCKRCPQ VDGYTGTVGI
NAAYIESDDI HSGNAFGTDK DGANASLDAD LNYRNGAGYK ARFQAHQLGL DNGFAHLEAG
KSGRYEITAD YQQLTSYQSG DARSQLWYKD GVLTPSEHTQ TQELSLQRNK AGLGLSYGRD
FYQAYIRYDH ENKTGYQSSS IVTPRPVNFG LPVDANTDNL TAGLSLSGDN WATDLNYFVS
QYKNDIGALS LPYLYDVFAP TPDNEAHQIS LSGQYQLSRT VMSGRLASGK MIQDDDLIQM
SGNPIQNWDG EVETLDGKLS VTSLLSNKLR LGGSVDYSKR DNKGSVWEFA QYEVNGITGA
FKQNVPLDTE RRGLKVNASY RFSSDYRLQA GYDRKEMERS HGDREQTNDD VLWAKLNVRA
LDDIKLKFKA SLDNRGGSEY QTSELTSSET NPLLRKYYLA DRKRTAFEAK FNHTPTSWLS
LDMTARYAKD DYDKTQLGLT GSEDYGYDIN LGLQLDVHLS GYAFAGQQWI DSNQTGSQSF
SAPDWSADIE DEFINLGAGF TYTGLLEDKL TLGGDYLFAN STSDTLVIYD VVTPQGDYYS
FNHSLKLHAN YALSEEMALK LAYQYERYYD TDYAQIDVDT VPGLTTLGDL NHNYNAHQVM
LSFSYQLR
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