| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0346 |
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| Symbol | |
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| ID | 5613897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 402419 |
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| End bp | 403975 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931178 |
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| Product | formate hydrogenlyase transcriptional activator, putative |
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| Protein accession | YP_001472087 |
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| Protein GI | 157373487 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.501163 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATTTA ACGGTAGCCA TTCAGAAGAA TCAATGGAAA AGTTCTATTA CAAAGCGACT
CAATGTTTAT GCAGTAGTCT TCAGTTAGAA GAGTCACTAC AGAGCTACTT TGATTACATT
AAATCCCATC TTCCAATCGA TGGGATCTAT CTGAATATCT ATCGTCCCGA TTTCAGCGAT
ATTCAGTTTA TCGCACAGGT AAATGATCAG CAGTCTTCTA CCCTGGATAG ACGGATACCT
ATCAGTAACG AGATGTGTGA GGCTCTTCAG GATCTCGACA GGCCAATTAT TCGTATCGTT
AATGATATTG AGCTCGATAC TGTGACCCAA TTTGTCGCCC CTCAGGTCAT TCCCGAAATT
AAATCAGTCA TCTTGTTGAG AATGGTTTCC GGAAATACCC ACCTTGGGGT CGTCGGCTTT
TATGCCAAGC AAGCCGGCGT ATTCAGGCCA CGACATGTGG ATATGCTTGA GCCCCACATG
CAGACTTTCT CTTTGATAAC CGCTTTTAAC CTTAAGGGGC GCAACTTGCT CAGAGCCAAT
GAAGCTCTGG CTGAGCAGAA TCAGTCTCTT AAGCGTACCT TGAACATCTG TAATGGTGTT
GTCGGTGCTC ATTCTGGTCT GAAGCATGTG ATGCAACAGG TTGAGTCTAT TGCCAAACTC
AATACAACAG TCTTGATGTT GGGCGAAACC GGTTGTGGTA AGGAGGTCAT AGCAAATGCT
ATTCATGAAC TCTCATTGCG CGCCAATAAG CCATTTATCA AGGTCAACTG TGGTGCGATT
CCCGAGAGCC TGATCGATTC TGAAATGTTC GGCTATGAGA GGGGGGCTTT CACCGGCGCG
GAGTCTCGCA AGGCCGGGTA TTTTGAGCAA GCCAATGGCG GCACTATTTT CCTGGATGAA
ATCGGTGAGC TACCACTGTC GGTCCAGGTC AGGCTACTCA GGGTATTGCA AAATAGTACC
ATTACCCGTG TAGGTGGCCA CGATTCCGTG CAGCTGGATA TCAGAGTCAT CGCCGCGACG
CACCGTAACC TCAAGGCGAT GGTGTCAACG GGCGAGTTTC GTGAAGATCT CTGGTACCGC
TTGGCTATTT TCCCGATTGA GATTCCCTCT CTGAGACAGA GGCGTACCGA CATTCCTCTG
CTAGTGCAGC ATTTTATCGA GATGCTGTCG GCAAAATTCA ACCAAGATCA ACTTCCCCGG
GTTGCGCCAG AACAGCTGGC CATTCTGAGT CAGTATCATT GGCCCGGTAA TGTCAGGGAG
CTGATAAACG TGCTTGAGAG AGCCATTATT CAGCACCCCA AGGGGCCGCT TAATTTCGAT
TTCCTGGTGC CTGAGGTGAA AGCCGAGCAT AAGGAGAAGA GGGGAGAGAC CATTATTGTC
GATCCCAGTC ATGCAACCGA TAAACTGGTG CCTCTGGAAA CCATGACCCG AAAATATATC
GAGCATGCGC TGCGGGTTAC AGGGGGAAAG CTCTATGGCC CGGGTGGTGC CGCTCAGTTG
CTGGACATCA ACCCGAATAC CATGCGTAGT AAGATGAAAA AATTAGGTAT CTGCTAA
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| Protein sequence | MIFNGSHSEE SMEKFYYKAT QCLCSSLQLE ESLQSYFDYI KSHLPIDGIY LNIYRPDFSD
IQFIAQVNDQ QSSTLDRRIP ISNEMCEALQ DLDRPIIRIV NDIELDTVTQ FVAPQVIPEI
KSVILLRMVS GNTHLGVVGF YAKQAGVFRP RHVDMLEPHM QTFSLITAFN LKGRNLLRAN
EALAEQNQSL KRTLNICNGV VGAHSGLKHV MQQVESIAKL NTTVLMLGET GCGKEVIANA
IHELSLRANK PFIKVNCGAI PESLIDSEMF GYERGAFTGA ESRKAGYFEQ ANGGTIFLDE
IGELPLSVQV RLLRVLQNST ITRVGGHDSV QLDIRVIAAT HRNLKAMVST GEFREDLWYR
LAIFPIEIPS LRQRRTDIPL LVQHFIEMLS AKFNQDQLPR VAPEQLAILS QYHWPGNVRE
LINVLERAII QHPKGPLNFD FLVPEVKAEH KEKRGETIIV DPSHATDKLV PLETMTRKYI
EHALRVTGGK LYGPGGAAQL LDINPNTMRS KMKKLGIC
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