| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0334 |
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| Symbol | |
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| ID | 5609685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 387040 |
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| End bp | 389145 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931166 |
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| Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
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| Protein accession | YP_001472075 |
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| Protein GI | 157373475 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.186212 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATCTGT TTGAAGGTCT CAAGGAGTCT GCATCGGGTT ATTTAGAACC TGATCAGGTA
GAATTACTCA AGCAGGCCTA TCAGGTGGCG CGTGATGCCC ATGAAGGTCA AATGCGCACA
AGTGGTGAAC CTTATATCAC ACACCCGGTT GCGGTAGCCC GCATCCTGGC CGATATGCGT
CTCGATCATG AGACGCTTAT GGCTGCCCTC CTGCACGACA CCATTGAAGA CACACCGGTT
ACCAAAGAGG AGCTCGCTGA GATTTTCAGT GAATCCATCG CCGAGCTGGT CGAAGGCGTC
TCCAAACTCG ATAAGCTAAA ATTCCGCGAT AAGAAAGAAG CCCAGGCCGA AAACTTCCGT
AAGATGATGA TGGCAATGAC TCAAGATATT CGAGTTATCC TGATTAAATT AGCCGATCGC
ACTCACAATA TGCGCACACT CGGAGCACTC AGACCCGATA AACGTCGCCG TATTGCCAGA
GAAACCCTCG AAATTTATGC ACCCATCGCT AATCGTCTCG GTATTCACAA TATCAAGATA
GAGCTGGAAG ACTTAGGCTT TCAAGCCTAT TACCCAATGC GTTACCGTGT GCTTAAAGAG
GTGGTTAAAG CCGCCAGAGG CAATCGTAAA GAGCTGATCC AAAGCATCGA GGCCGCGGTG
CATACTCGCC TCGAAGACAC CGGATTGCAG GGCACCGTTA AGGGCCGAGA AAAGAATCTC
TACTCCATCT ATAACAAGAT GCGTAGCAAG GAACTTCAAT TCCAGGAAGT GATGGATATC
TATGCCTTCC GCGTAATTGT CGATTCCATA GACACCTGTT ACCGCGTCAT GGGTGCTATG
CATGGGCTAT ACAAGCCTCG CCCGGGACGT TTCAAAGATT ATATCGCTAT CCCTAAAGCC
AACGGTTACC AATCCTTGCA TACCTCATTG TTTGGTCCTC ACGCTGTACC CGTTGAGATA
CAGATCCGTA CCGAAGATAT GGACCAGATG GCTGATAAAG GGGTTGCGGC ACATTGGGTC
TACAAGAAAG GCAGTTCCGC AGAACAAGGG ACCACGACAC AAGTCCGTGC CCGTAAGTGG
ATGCAGAGCC TGCTGGAATT GCAGCAGAGC GCCAGTACCT CGTTCGAATT CGTCGAAAAC
TTTAAGACCG AGCTCTTCCC TGAAGAGATC TATGTCTTTA CTCCCGAAGG GCGCATTCTC
GAACTTCCCG TCGGTGCAAC ACCCGTCGAT TTTGCCTATG AAGTTCATAC CGATGTGGGT
AATACCTGTG TCGGCGCGCG CGTGAATCGT CAGGCCTATC CACTTAGCCA GCCATTGATC
TCGGGGCAAA CCGTTGAAAT TATTACGGCC AAGGGGGCCA GGCCCAATGC CGCCTGGTTG
AACTTTGTTG TTACGGGTAA GGCTCGCGCT AAGATCCGCC AGATATTGAA GAGCCTCAAA
GAGGTCGACG CGGTAGCACT GGGTAAGCGT CTGTTAAATC ATGCATTGGG CGAAACTAAG
TTAGATACTA TTTCGGCCGA ACAGATCGAC AGCGTCGTCA ACGACACCAA ACATAACACC
TTAGATGAGC TATTGGCCGA TATTGGCTTA GGCAATGCCA TGAGCATTGT TATCGCTCAG
CGACTTCGTG GCGATCAGAT AGAGCAGCAC GAAGATAAAG ACTCCAACAT GATGCCGATC
AGAGGCGCCG AAGGCATGCT GGTGACCTTT GCCAACTGTT GTCGCCCAAT CCCCGGCGAT
GCCGTCATCG CCCACGTTAG CCCGGGCAAA GGCCTGGTCG TACACATGGA AAGTTGTGCC
AATATTCGTG GTTATCAGGG TGAGCCGGAT AAATATATTC CAGTCCAATG GGACAGCGCA
GAGGGCGTCG AGTACCAGGC GAACTTGCGA GTAGAGATAG TGAATCATCA AGGAGCCTTG
GCTAAAATCA CCTCGATTGT TGCCGCCGAA GGCGCCAATA TTCACAATCT CAGCACCGAA
GAGCGTGATG GCAGAGTCTT CCTCATCAAT CTGCGCGTTT CAGTCAGAGA CCGAATTCAC
TTGGCCAACG TGATGCGACG CATCAGAGTA TTACCTGAAG TATTACGTAC ATCCCGTAAT
CGCTAG
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| Protein sequence | MYLFEGLKES ASGYLEPDQV ELLKQAYQVA RDAHEGQMRT SGEPYITHPV AVARILADMR
LDHETLMAAL LHDTIEDTPV TKEELAEIFS ESIAELVEGV SKLDKLKFRD KKEAQAENFR
KMMMAMTQDI RVILIKLADR THNMRTLGAL RPDKRRRIAR ETLEIYAPIA NRLGIHNIKI
ELEDLGFQAY YPMRYRVLKE VVKAARGNRK ELIQSIEAAV HTRLEDTGLQ GTVKGREKNL
YSIYNKMRSK ELQFQEVMDI YAFRVIVDSI DTCYRVMGAM HGLYKPRPGR FKDYIAIPKA
NGYQSLHTSL FGPHAVPVEI QIRTEDMDQM ADKGVAAHWV YKKGSSAEQG TTTQVRARKW
MQSLLELQQS ASTSFEFVEN FKTELFPEEI YVFTPEGRIL ELPVGATPVD FAYEVHTDVG
NTCVGARVNR QAYPLSQPLI SGQTVEIITA KGARPNAAWL NFVVTGKARA KIRQILKSLK
EVDAVALGKR LLNHALGETK LDTISAEQID SVVNDTKHNT LDELLADIGL GNAMSIVIAQ
RLRGDQIEQH EDKDSNMMPI RGAEGMLVTF ANCCRPIPGD AVIAHVSPGK GLVVHMESCA
NIRGYQGEPD KYIPVQWDSA EGVEYQANLR VEIVNHQGAL AKITSIVAAE GANIHNLSTE
ERDGRVFLIN LRVSVRDRIH LANVMRRIRV LPEVLRTSRN R
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