| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0293 |
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| Symbol | |
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| ID | 5609853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 345432 |
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| End bp | 347255 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931125 |
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| Product | GTP-binding protein TypA |
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| Protein accession | YP_001472034 |
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| Protein GI | 157373434 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0644132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000110369 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTAGAGA ATTTACGTAA CATCGCCATT ATTGCACACG TTGACCATGG TAAAACTACC
CTGGTAGACA AGATGCTGGC GCAGTCTGGA ACCCTTGAAA CTCGAGGAGA AGCCACTGAG
CGGGTGATGG ATTCGAACGA TCTTGAAAAG GAGCGTGGAA TCACGATTCT GGCAAAGAAT
ACGGCCATCA AGTGGAATGA TTACCGCATC AACATCGTGG ATACACCTGG TCACGCCGAT
TTCGGTGGTG AAGTTGAGCG TGTTCTCTCT ATGGTTGATT CAGTACTGCT TCTTGTTGAT
GCGGTTGACG GCCCTATGCC GCAAACTCGC TTCGTAACTA AGAAAGCATT TGCTCAAGGC
CTTAAGCCTA TTGTTGTTAT CAACAAGATT GACCGTCCAG GCGCTCGTCC TGATTGGGTT
ATCGATCAAG TATTCGATCT TTTCGACAAC TTAGGCGCTA CCGATGAGCA GCTAGATTTC
CCAATCGTTT ATGCTTCTGC ATTAAACGGT TTCGCTTCTC TTGATCCTGA AGTATCAGAG
GGTGACATGA CTCCTCTGTT TGAAACTATC GTTGAGAAAG TTTCATCTCC TGACGCTGAT
GCTGAAGGTG ATTTCCAGAT GCAGATCTCT CAAATCGACT ACAACTCATA CGTGGGTGTT
ATCGGTATCG GTCGTATCAA GCGTGGTAGC GTTAAAACTA ACCAGCAGGT CACTATTATT
GGCGCTGATG GCAAGAAACG CAACGGTAAA ATGGGCCAGG TATTAGGTTA CATGGGTCTT
GATCGTAACG AAGTTGCAGA AGCAAATGCT GGTGACATCG TTGCAATTAC AGGTCTTGGT
CAGCTACAAA TTTCAGACAC TGTCTGTGCA CCTACTACAG TAGAAGCACT ACCTCCATTG
TCTGTTGATG AGCCAACACT AACCATGACC TTCCAGGTCA ACACCTCTCC ATTCGCTGGT
AAAGAAGGTA AGTACGTGAC TTCACGTAAC ATCCTTGAGC GTCTTGAGCA GGAATTGGTT
CACAACGTTG CACTACGCGT TGAAGAGACT GATAGCCCGG ATCGTTTCCG CGTATCGGGT
CGTGGCGAAC TTCACCTATC TATCCTTATC GAAAACATGC GTCGTGAAGG TTACGAGCTA
GCCGTTTCTC GTCCAGAAGT TATCGTTAAA GAGATTGATG GCGAGATGTG TGAGCCGTTC
GAAACGCTAA CCGTTGATGT TGAAGAAGAT CATCAAGGTA CTGTTATCGA GAAGCTTGGT
ATCCGTAAGG GTGACATGAG AGACATGCAG CTAGATGGTA AGGGTCGTGT TCGTATCGAC
TTCGTTATCC CTAGCCGTGG CTTGATTGGT TTCCAAACTG AGTTCATGAC AGCGACTTCT
GGTACAGGTC TTATCTACCA TTCATTCGAC CATTACGGTC CAGTGAAAGG CGGTGATATC
GGTCAGCGTG CACGTGGCGT ATTGATCTCT AACGCAACAG GTAAAGCACT GACATTCGCA
TTGTTTAACC TTCAGGAACG TGGTCGTCTG TTTATTACAC ATGCTGCAGA AGTTTATGAA
GGTCAAGTTG TTGGTCTACA CGCTCGCGCT AACGATCTTA CAGTTAACTG TTTGAAAGGT
AAGCAGCTTA CCAACATGCG TGCATCGGGT ACCGATGAAG CACAGGTACT GACTCCACAT
ATCGAAATGA CACTTGAGCA AGCGCTTGAG TTCATCGATG ATGACGAGCT AGTAGAAGTA
ACGCCGCTGA ACATTCGTGT TCGTAAGCGT TACTTGACTG AAAACGAGCG TAAGCGTCAT
AACCGTGCGG CTAAAGACGC TTAA
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| Protein sequence | MLENLRNIAI IAHVDHGKTT LVDKMLAQSG TLETRGEATE RVMDSNDLEK ERGITILAKN
TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG
LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FASLDPEVSE
GDMTPLFETI VEKVSSPDAD AEGDFQMQIS QIDYNSYVGV IGIGRIKRGS VKTNQQVTII
GADGKKRNGK MGQVLGYMGL DRNEVAEANA GDIVAITGLG QLQISDTVCA PTTVEALPPL
SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLEQELV HNVALRVEET DSPDRFRVSG
RGELHLSILI ENMRREGYEL AVSRPEVIVK EIDGEMCEPF ETLTVDVEED HQGTVIEKLG
IRKGDMRDMQ LDGKGRVRID FVIPSRGLIG FQTEFMTATS GTGLIYHSFD HYGPVKGGDI
GQRARGVLIS NATGKALTFA LFNLQERGRL FITHAAEVYE GQVVGLHARA NDLTVNCLKG
KQLTNMRASG TDEAQVLTPH IEMTLEQALE FIDDDELVEV TPLNIRVRKR YLTENERKRH
NRAAKDA
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