Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0292 |
Symbol | glnA |
ID | 5611526 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 343643 |
End bp | 345052 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931124 |
Product | glutamine synthetase |
Protein accession | YP_001472033 |
Protein GI | 157373433 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0174] Glutamine synthetase |
TIGRFAM ID | [TIGR00653] glutamine synthetase, type I |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00000978153 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCAGCTG AATCAGTTTT ACAACAACTC GAAGAATTAG AAGTTAAGTT TGTTGATTTG CGTTTTACCG ATACGATAGG TAAAGAGCAA CACGTTTCCA TCCCAAGCCA TCAGGTTGAT GCTGACTTTT TCGAAGACGG CAAGATGTTT GACGGTTCTT CAATATCAGG TTGGAAAGGC ATTAACGAAT CAGACATGGT ATTGATGCCT GATGCAGCAA GTTTCGTACT TGATCCTTTC ACAGCTGAAA CCACCGCGAA CATTCGTTGT GACATTTTAA ACCCTGGCAC ATTGACAGGT TACAACCGTG ACCCTCGTTC GATTGCGAAA AAAGCCGAAG AGTACTTACG CTCTACAGGT ATTGCAGACA CTGTATTGAT TGGTCCAGAG CCAGAGTTCT TCCTATTCGA CGACGTTAAA TACGGCGCCG ACATGTCAGG TTGTTTCTAC AAGGTAGATG CAGAAGAAGC TTCTTGGAAC TCAGGCACTC ATTACGATGA AGGCAACACG GGTCATCGTC CCGGCGTCAA AGGTGGTTAC TTCCCTGTCG CTCCTGTTGA CTCTTCACAA GACCTACGTT CTGCAATGTG TCTCGTTCTG GAAGAGATGG GTCAGGTTGT TGAAGCGCAT CACCACGAAG TGGCGACTGC CGGTCAAAAC GAAATTGCGA CTCGCTTTAA TACGCTTACG CTAAAGGCCG ATGAAGTTCA GGTACTTAAG TATGTTATCC ATAATGTTGC TCACGCTTAC GGTAAGACAG CGACCTTTAT GCCTAAGCCG ATCGTTGGTG ATAACGGTAG CGGCATGCAC GTTCACCAAT CTCTGGCGAA AGACGGTGTG AACCTATTTG CCGGTGACAA GTACGGCGGA TTGAGCGAGA TGGCCCTGTT CTACATTGGT GGTATTATCA AGCATGCGCG TGCAATCAAC GCTTTTGCTA ACCCATCAAC TAACTCATAC AAGCGTCTTA TCCCACATTT TGAAGCGCCG GTAATGCTTG CATATTCTGC CGCAAACCGT TCAGCTTCAA TCCGTATCCC AATGGTACCA AGTGCGAAAG GACGTCGTAT CGAGCTTAGA TTCGGTGATC CAATGGCTAA CCCATACCTG GCATTCTCTG CAATGCTAAT GGCTGGCCTT GACGGTATTC AAAACAAGAT CCACCCAGGT GAAGCGATGG ATAAAGATCT TTATGATCTA CCTCCTGAAG AAGCTGCGGA GATCCCAACA GTTGCAACGT CACTGGAAAA TGCACTCGAG TGTCTGGATG CTGACCGTGA GTTCCTGACT CGTGGCGAAG TATTCTGTAA TGACTTCATC GATTCTTATA TCGCACTTAA GTCTGCCGAT GTTGAGCGCG TAAACCAAAC GACTCACCCA GTTGAATTTG AGCTTTATTA CAGCTTGTAA
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Protein sequence | MSAESVLQQL EELEVKFVDL RFTDTIGKEQ HVSIPSHQVD ADFFEDGKMF DGSSISGWKG INESDMVLMP DAASFVLDPF TAETTANIRC DILNPGTLTG YNRDPRSIAK KAEEYLRSTG IADTVLIGPE PEFFLFDDVK YGADMSGCFY KVDAEEASWN SGTHYDEGNT GHRPGVKGGY FPVAPVDSSQ DLRSAMCLVL EEMGQVVEAH HHEVATAGQN EIATRFNTLT LKADEVQVLK YVIHNVAHAY GKTATFMPKP IVGDNGSGMH VHQSLAKDGV NLFAGDKYGG LSEMALFYIG GIIKHARAIN AFANPSTNSY KRLIPHFEAP VMLAYSAANR SASIRIPMVP SAKGRRIELR FGDPMANPYL AFSAMLMAGL DGIQNKIHPG EAMDKDLYDL PPEEAAEIPT VATSLENALE CLDADREFLT RGEVFCNDFI DSYIALKSAD VERVNQTTHP VEFELYYSL
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