Gene Ssed_0290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0290 
Symbol 
ID5611524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp339691 
End bp342486 
Gene Length2796 bp 
Protein Length931 aa 
Translation table11 
GC content44% 
IMG OID640931122 
Producthistidine kinase 
Protein accessionYP_001472031 
Protein GI157373431 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000039083 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCACCGA GCAGCTATCG ACATAGCATA GGGTTCAGGC TCAATCTCAG CACGCTGATC 
ATAGGATTTA TTATCTGCGT GATCTTGAGT GGTTACTTTA TTCAGGAGAC ACGGGAACGA
CTTAAAGTTC AAGCCCATCA TGAATTAACC CAAATAACGG ACTCATTAAA GCTTGCCCTT
GAAACGAACT CACAGACCAG CAATATGATC AGAGTGGTTG GGGTGTTATC CACCTACCCA
AACATCACAC GCCTTACCGT CATCAAGGCC TCAGATCTCA GCATTAGCGC CGATAGCTTA
GTACAAAACA ATGGTAAAAG AGCCAATCTG GTATTTTCCA ATACCATTAT GAAGCTCATC
AATAATCCCG CTAAGAGTAG TCAAAGAGAT CAGGGGATCT TGATAGATAA CAGCCTACAT
CAGTCTGTAA AAATCCACCT GGTAGATCCC CAAGCAAACC GGTTAAAGCC CTACATTATC
TACCTCGAAT ATAACAAGCA AGCGCTCGAA AGAATCTTAC AGCAAGCCAG AAATCACTTA
ATGTTGATCG TGATTGGCGG GTTAATTTTA CTCTTGTTGA TTAATATTTT TATTCAACGA
GTCGTCGTGT TAAAGCCGCT TTCAAAGATG ACGCAACAGC TACTGAATCA AGATAACAGC
GAGCAAATTC CCGAACCTCT GCAAGTGTCT ACTAATGATG AATTTAGCAT TCTGGCAAAT
AGTTATAATG GTTCAATCCA TAAACAACTA CTGCAAAAAG CTGAGGTCGA AAAATCACAC
AGATATATCA AGAACATGGC TAGCGCGCTT CCGGTGCATT TACTGTATGT AGATATCGAC
AAAAAAATTC AGTTTATCAA TCAATATAGT CTGCAGTGGT TAGCCAAACC GATGGAGGAG
GTGTTAACGC AAACTTGCCG ACAGGTACTC CCCAGTCAAT TATTCAGTTT AATCGAGCGG
CCCATTGAAA CTGCGTTACA AGGTGATTCA ATCACCTTAG ACGCTGAGTT TTTTCACAAA
AATATGAGTC TGTTTTTTCA TATCACCCAT ATACCGGATA TCGATAACGA AGGGAGAATA
AAAGGAATAT TTATCTGTAT TGAGGATAGA ACTCAGACAA GAGATAACGA AAAGAAGATT
GAGAAATATG CCCACCAGCT TGAGATGAAC AACCTGGCTT TAGATGATGC CCGTGAAACC
GCAGAAGCGG CTGCACAGTC TAAATCGGAG TTTCTCGCCT GTATGAGTCA TGAGATCCGC
ACACCGATGA ATGGGGTTTT AGGTATGCTC ACCCTGTTAG AGCGTACAGC CCTGGATCAA
AGTCAACGTA ATCACTTAGA TACCGCCCAA GGCAGCGCAA GAAACCTGCT AGGCTTAATC
AACGATATTC TTGATTTTTC AAAGATTGAA TCTGGAAAAT TTCCCATAGA GTCCGTTAAT
TTTAGCTTGA CCAATCTACT CAATGAAACT ATTCGCCCTC TAGCCATTCG CGCACAAGAG
AAAGGCATTG AGCTTGTTAG CGACATCACC GACATAACGT CACAGAGCTT TAAAGGCGAT
CCTACTCGCA TCTCTCAAGT ACTGACAAAC CTGATTGGAA ATGCGATTAA ATTTACCGAG
AAAGGCAGTA TCACTGTTTA TGTGAAACAG AATGACGATA TCGAACCGCG ACTCAACTTC
TCAGTTGAAG ATACCGGTAT TGGTTTGGCA TCGAATCAGC TTGAAAAGCT GTTCCAACCT
TTCACTCAGG CCGATAGCTC GACGACTCGT CACTTTGGCG GAACTGGTCT GGGACTCTCG
ATAGCTAAAC GTCTTACTGA GCTCATGGGG GGGAGTATTT CAGTGGTAAG TACTGAAGGT
AAAGGCAGTA AATTTAGTTT CAACGTTCGA GTCGAAATCG CGAGCAAAGA TGATCTGTAT
GCCACAGACC TGAACTCCCT ACCCATCCTT TTCTTTAGCC GAGGAACGCG AGCCGATCAA
GTTCTGGGAA AAACGCTCAA CTTATTAAAT GCCAGCCTTA AGGTCGTCAA GGCGGCTCGA
TTGGCAAATT TTAAACCGGC AAGTATTTCG GATACATATC GACCCAAACT CACCATTATT
CACCTCCCCG CAGGACAAGA GGCCATCGAA ACCGAACTTG CGAAACTGGC GAGCAATACA
GATTTACCCG ATACACCAAT CCTACTTTTC ATTGCAGCCA TCGATGAATC AATCATGACT
CAATACCTCA ATGAACAAAT TTTCACTTAC CTCTGTAACC CATTGCATTT AGAGCAACTA
TTGATAGCGT TAAAGCAGAT AGACCAAACT GCCCCTCACC TTGTTCAACG GCTTGCTCCG
CAAACTCAAA GAGACTGGGA TCTGAAAAGC TATTTTGAAG ATAGGCTTCC CAAGCTGCTC
CTTGTTGAAG ACAACAAAAC CAACCAAATG GTGGCTCAAG GGATCATTGC CGAATTCGGC
CTGGAGATAG ACATTGCATC AGATGGGGAG CAGGCCATTG AGATACTCAA AGACTCGATA
ACCTCACCAT ATCAATTAAT TTTTATGGAC TGCCAAATGC CGCGTTTAGA CGGCTATCAA
ACGACTCAGA TGATCAGGGC CGGTTATACG GGTCATCAAT ACAAACATAT TCCCATCATA
GCTATGACGG CGAATGCGAT GGTGGGTGAC CGGGAGCGAT GTCTGCAAGC TGGGATGAAT
GACTACATAT CTAAACCACT AGACCCCGAT GATATTAAGC AAGCTTTGTT AAGTACGCTA
GCTGGCCATG ATACAGAAAG CGAGATGAGG AACTGA
 
Protein sequence
MAPSSYRHSI GFRLNLSTLI IGFIICVILS GYFIQETRER LKVQAHHELT QITDSLKLAL 
ETNSQTSNMI RVVGVLSTYP NITRLTVIKA SDLSISADSL VQNNGKRANL VFSNTIMKLI
NNPAKSSQRD QGILIDNSLH QSVKIHLVDP QANRLKPYII YLEYNKQALE RILQQARNHL
MLIVIGGLIL LLLINIFIQR VVVLKPLSKM TQQLLNQDNS EQIPEPLQVS TNDEFSILAN
SYNGSIHKQL LQKAEVEKSH RYIKNMASAL PVHLLYVDID KKIQFINQYS LQWLAKPMEE
VLTQTCRQVL PSQLFSLIER PIETALQGDS ITLDAEFFHK NMSLFFHITH IPDIDNEGRI
KGIFICIEDR TQTRDNEKKI EKYAHQLEMN NLALDDARET AEAAAQSKSE FLACMSHEIR
TPMNGVLGML TLLERTALDQ SQRNHLDTAQ GSARNLLGLI NDILDFSKIE SGKFPIESVN
FSLTNLLNET IRPLAIRAQE KGIELVSDIT DITSQSFKGD PTRISQVLTN LIGNAIKFTE
KGSITVYVKQ NDDIEPRLNF SVEDTGIGLA SNQLEKLFQP FTQADSSTTR HFGGTGLGLS
IAKRLTELMG GSISVVSTEG KGSKFSFNVR VEIASKDDLY ATDLNSLPIL FFSRGTRADQ
VLGKTLNLLN ASLKVVKAAR LANFKPASIS DTYRPKLTII HLPAGQEAIE TELAKLASNT
DLPDTPILLF IAAIDESIMT QYLNEQIFTY LCNPLHLEQL LIALKQIDQT APHLVQRLAP
QTQRDWDLKS YFEDRLPKLL LVEDNKTNQM VAQGIIAEFG LEIDIASDGE QAIEILKDSI
TSPYQLIFMD CQMPRLDGYQ TTQMIRAGYT GHQYKHIPII AMTANAMVGD RERCLQAGMN
DYISKPLDPD DIKQALLSTL AGHDTESEMR N