| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0282 |
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| Symbol | |
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| ID | 5611948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 331803 |
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| End bp | 333218 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931114 |
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| Product | nitrogen metabolism transcriptional regulator NtrC |
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| Protein accession | YP_001472023 |
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| Protein GI | 157373423 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.675957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000421571 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTATAA CGGAACAAGT TTGGGTGCTC GATGATGACA GCTCTATTCG TTGGGTAGTT
GAAAGAGCAT TAAAGGGCGC CAGTATTACC AGTGCAAGCT TTGCGGCAGC CGAATCACTT
TGGGAGGCGC TCGAACTGGC ACAGCCTAAA GTCATTATTT CAGATATTAG AATGCCAGGA
ACGGATGGAT TGAGTCTACT CGAACGCATT CAAGTTCATT ACCCCCACAT TCCTGTAATT
ATAATGACGG CACATTCGGA TCTGGACAGT GCAGTTAGCG CATATCAAGC CGGGGCATTC
GAATATCTGC CGAAACCATT TGATATCGAT GAGGCCATTG CACTTGTAGA GCGAGCATTG
ACCCACTCTA CCGAGCAGGC AAGTAATACT CCTGAGGAGA TACAGGTCAA AGCACCTGAG
ATAATAGGTG AGGCGCCGGC AATGCAGGAG GTATTTCGCG CGATAGGCCG ATTATCGAGA
TCCTCTATCA GCGTGCTGAT TAATGGTCAG TCCGGAACGG GTAAGGAACT GGTTGCAGGT
GCACTACACA AGCACAGCCC ACGAAAAGAA AAACCATTTA TCGCGATTAA TATGGCTGCA
ATACCTAAAG ATTTGATTGA GTCTGAACTC TTCGGCCATG AAAAGGGGGC GTTTACCGGA
GCAGCAGGTG TCAGACAAGG CAGGTTTGAA CAGGCAAATG GAGGCACCCT GTTTCTGGAC
GAGATTGGTG ATATGCCACT CGATGTTCAA ACACGATTAT TGAGAGTCTT AGCAGATGGT
CAATTCTATC GAGTCGGTGG ACACTCTCCT GTTCAAGTTG ATGTAAGGAT CATTGCTGCT
ACTCACCAGG ATCTTGAACT GTTAGTACAG AAAGGTGATT TTCGAGAAGA TCTATTTCAC
CGCCTTAATG TCATAAGGGT TCATCTGCCA CCATTATCAC AACGACGAGA AGATATTCCT
CAGCTCGCTC GTCACTTCCT CTCTTCTGCT GCTAAAGAGA TAGCGGTTGA ACCTAAGGTT
CTGACCTCTG AAACGGCAAA AAAACTCTCT GAATTGCCTT GGCCTGGAAA CGTGCGTCAG
CTTGAGAACA CATGCCGCTG GTTGATGGTA ATGGCATCCG GGCAGGAAAT TTTACCTCAA
GACCTCCCCC CTGAGCTGCT CAAAGAACCC AACAGCTCCA ATATAGATCG CTCAGGAGAA
ACTGCTGATT GGCAGGAGTC TTTAAAGAAC TGGATTAACC AACGTCTGAA AGAAGGTGAA
AGTGATCTGC TTACCGAAGT ACAACCAGCT TTTGAGCGCA TACTACTCGA AACGGCCTTG
GAACATACTA ACGGTCATAA ACAAGAAGCA GCTAAACGCT TAGGTTGGGG TCGCAATACA
CTGACACGAA AATTGAAAGA ACTGGCTATG GAGTAA
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| Protein sequence | MSITEQVWVL DDDSSIRWVV ERALKGASIT SASFAAAESL WEALELAQPK VIISDIRMPG
TDGLSLLERI QVHYPHIPVI IMTAHSDLDS AVSAYQAGAF EYLPKPFDID EAIALVERAL
THSTEQASNT PEEIQVKAPE IIGEAPAMQE VFRAIGRLSR SSISVLINGQ SGTGKELVAG
ALHKHSPRKE KPFIAINMAA IPKDLIESEL FGHEKGAFTG AAGVRQGRFE QANGGTLFLD
EIGDMPLDVQ TRLLRVLADG QFYRVGGHSP VQVDVRIIAA THQDLELLVQ KGDFREDLFH
RLNVIRVHLP PLSQRREDIP QLARHFLSSA AKEIAVEPKV LTSETAKKLS ELPWPGNVRQ
LENTCRWLMV MASGQEILPQ DLPPELLKEP NSSNIDRSGE TADWQESLKN WINQRLKEGE
SDLLTEVQPA FERILLETAL EHTNGHKQEA AKRLGWGRNT LTRKLKELAM E
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