Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0281 |
Symbol | |
ID | 5610580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 317399 |
End bp | 318268 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931107 |
Product | cation diffusion facilitator family transporter |
Protein accession | YP_001472022 |
Protein GI | 157373422 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0053] Predicted Co/Zn/Cd cation transporters |
TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000230949 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000100578 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAACAGA CTTCCCAATA TGACTTCTGG GTCAAGTTAG CTAGCCGCGC AGCTGTGGCT ACTGCCTTGA CCCTTATTAT TATCAAGATG GCGGCCTGGA TGTACTCAGG TTCGGCCAGT ATGTTAGCGT CATTAACAGA TTCATTTGCC GATGCCCTAG CTTCAATAGT TAACTTCATC GCGATCCGGT ATGCAATCGT ACCAGCCGAT CAGGATCATA GGTACGGACA TGGTAAGGCA GAGCCACTGG CAGCCTTAGC TCAGTCAGCA TTTATTCTTG GTTCAGCCTT CCTGTTACTG TTTCACGGTG GCGATCGATT AATTAATCCG ACGCCAATTA ATCATGCCAT GGTAGGCGTT GTCGTATCCG TTGTCGCCAT TGTATTAACG TTTGCCTTGG TCTTATTGCA GAAAAGAGCC TTGGCAGAGA CTTCCAGTAC AGTAGTAGAA GCCGACGCGC TACATTATAA GTCTGACCTG TTTCTGAATG CAGCGGTATT ACTCGCATTA GTCTTATCTC AGTATGGTTG GTGGTGGGCC GATGGTCTGT TTGCCATTCT TATTGCCATC TTTATTGGTC AACAAGCCAT TGGGCTTGGC TACCGTTCGA TTCAGTCACT GCTAGATAGA GAGTTGGATG CTGATACTCG ATTGACGATC GTTGAGTTAA TCCAGGAAGA TCCGAGAGTA AACGGGTTTC ATGACCTTAG AACTCGCGAG TCAGGAAAGA CCACTTTCAT TCAATGTCAC TTAGAACTGG ATGGCGATCT TACATTAAGA GATGCCCATA CAATCGCAGA TGAAACCGAG GAAAGGTTAA GAAATGCTTT TGATCATGCC GAAGTGATCA TCCATCAAGA TCCTGTATAA
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Protein sequence | MKQTSQYDFW VKLASRAAVA TALTLIIIKM AAWMYSGSAS MLASLTDSFA DALASIVNFI AIRYAIVPAD QDHRYGHGKA EPLAALAQSA FILGSAFLLL FHGGDRLINP TPINHAMVGV VVSVVAIVLT FALVLLQKRA LAETSSTVVE ADALHYKSDL FLNAAVLLAL VLSQYGWWWA DGLFAILIAI FIGQQAIGLG YRSIQSLLDR ELDADTRLTI VELIQEDPRV NGFHDLRTRE SGKTTFIQCH LELDGDLTLR DAHTIADETE ERLRNAFDHA EVIIHQDPV
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