| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0279 |
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| Symbol | |
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| ID | 5610578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 315877 |
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| End bp | 316560 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931105 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001472020 |
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| Protein GI | 157373420 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000622263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000101633 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAGCCAAA TATTACTGAT CGATGATGAC CTAGGCCTGT CTGAGCTATT GGCACAACTT
CTTGAGCTAG AAGGGTTTGA GCTTACTCTT GCCCACGATG GTCAGGAAGG ACTCAAGCTA
GCACTCGAAA AGCAATTTGA CCTCATTCTT TTAGACGTGA TGCTACCTAA ACTCAATGGA
TTTGAGGTCC TGAAGGCGCT TCGTGTCAGC AAGCAAACTC CGGTTCTGAT GTTAACCGCA
AGAGGTGATG AGATTGACCG AGTTGTCGGA CTTGAAATTG GCGCCGACGA CTATCTACCT
AAACCTTTCA ATGACAGAGA GCTCGTTGCC AGAATAAAAG CCATAATAAG ACGCTCCAAT
ATTTTACCGG AAGAAAAAGC AACGACTGTA TATGAATATG GTGATATTCA ACTCGACCCA
GGCAGACAGG AAGTCTTTTG CCAAGATCAA CTGCTCATAT TAACAGGAAC AGAGTTCGGC
CTGCTGTTTG AGATGTTACA GAATGGCGGC GAGTTGATCA GCAAAGAGAT GCTCAGCGAA
AAAGTGCTGG GGAAAAAGCT GATGCCATTC GATCGCAGCC TGGATATGCA CCTTTCAAAC
TTACGAAAAA AATTACCCGA ACGCACTGAT GGTCGACCAA GAGTCAAGAC TATCCGAGGT
AAGGGCTACA TTTGGCTGCC CTAA
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| Protein sequence | MSQILLIDDD LGLSELLAQL LELEGFELTL AHDGQEGLKL ALEKQFDLIL LDVMLPKLNG
FEVLKALRVS KQTPVLMLTA RGDEIDRVVG LEIGADDYLP KPFNDRELVA RIKAIIRRSN
ILPEEKATTV YEYGDIQLDP GRQEVFCQDQ LLILTGTEFG LLFEMLQNGG ELISKEMLSE
KVLGKKLMPF DRSLDMHLSN LRKKLPERTD GRPRVKTIRG KGYIWLP
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