| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0270 |
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| Symbol | |
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| ID | 5614222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 305272 |
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| End bp | 307068 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931096 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001472011 |
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| Protein GI | 157373411 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000773835 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCATCTA AACTGCAATT ACAACATTGG TTATCTGACT CATGGCAGCG AAGTGTGGGC
GCTGGTTTAT CTGAATCTCA ACCACCCGAA GAGCTTCGCC TGAATTCATC GGCCATTCGG
CAAAAGCACG AGCAGCATGG CCAGTTAATA GACTTGGTTC AGAGCCATGC CTTACCCCTG
TTTAATCAGT TAATGGCTCA TACCAGCAGT CGGCTGATCT TGTCTGACAG AGAGGGCTAT
GTCTTATCTC ATTGGGGAGT GGATAAATAC TCCGACAGGC TGGCTAATGT GGCGCTCGAC
ATAGGGGTTA ACTGGCAAGA GGAGCATAAG GGAACCAATG CGATAGGTAC GGCATTGACT
GCCAGACAGG CGGTTTCAGT GGTCGGCGAC CAGCACTTCA TACGACAGCA TAGATTTATG
AGTTGTACTG CGTGTCCGAT ATTTTCACCT TCCGGTGAGA TGATAGCGGC CATCGATATA
ACCAGTGAGC AGCAAAGGCA CACTCAGCAA ACTTTACTCT TAGTCTCCAG CCTGGCCCAG
CAGGTGGAAA CGGCACTCTT GTGTCACCTC CCCGATAGCC ACTACCGTAT TAACCTTGCG
TCACAACCCT CTCTCATTAA TTCGGGGTGG CAGGGCATCT TAGTTGCAGA TAATGATGGG
AAAATACTGG GGTGTAACCC TATGGCAAAG CAGTTGCTGG GTTCGGCGCG AGTCGGTGAT
GCCATAGATC AACATCTGGG GCGGGACTGG AGCCACAATG AACGAATACA GAAGCATGAA
AACCTGCATC TGCAGACTCA ACCACTAAAG CCGGCTCGTA TAGGTGTGGG ACAAAGCAGA
TCTCGTTCAA ACAGGCCGGT GAGCCAGTTG GGCGTAAAGT TTCGCGAACC TAAGTTAGAG
CGGGCCTGGC AGCATGCCAA TAAAGTGTTG AGTAAAAATA TCCCCTTGCT AATCACTGGG
GAAACCGGCG TAGGAAAAGA TCAATTCGTT AAACAGTTAC ATGCCCAGAG CAGGCGGAGA
GAACAGCCTA TTGTTGCGGT CAATTGTGCG GCCTTACCCG ATAACCTGGT TGAGTCTGAG
TTATTTGGCT ATCACTCAGG CGCCTTCACC GGTGCTAATC GCGCCGGTTA TATAGGCAAG
ATTCGTCAGG CTGATGGCGG CTTCCTGTTT CTGGATGAAA TCGGTGAGAT GTCTCTGGGC
GCTCAGAGTC GGTTATTACG GGTGCTGCAA GAGCGTGAGG TGATCCCGGT CGGGAGTAAT
AATGTTTATA AAGTCGATAT TCAGGTGATA GGAGCGACAC ATACCGATCT GAAACAGCGG
GTCGCCGATG GCCTGTTCAG GCAAGATCTC TACTATCGAC TCAATGGATT ACAGATCCGC
TTACCTCCCC TGAGACAGCG CAGTGATATT GAACGCATCA TTCAGAAACT ACATAACAAG
CATAAGGCCC ATGAGCAGAA TTTATGTGGC CGTTTATTGA GTCAGCTATG TCACTATCAA
TGGCCAGGAA ACCTCAGAGA GCTGGATAAT TTTATGCAGG TTGCCAGCAT CATGGCTGAA
GGTGAAAGCG AGCTAAACTG GTCTGCTCTA CCCGATGAGT TGCAAACGCA GTTGATGGAT
GGAAAAGCCA TTCCTCCCAC CGATTCAAAA CCTATGGAGC TGAGTGATAC CGTGGATGCG
AATGTCGTTG CCGCTTATCG GCGTTTTGAA GGCAATGTGA GCCAGTCTGC AAAGCATTTG
GGGGTAAGTC GAAACACTCT ATATAGGAAG CTTAAGCGAC TCGGGTTGAA AAGTTAA
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| Protein sequence | MASKLQLQHW LSDSWQRSVG AGLSESQPPE ELRLNSSAIR QKHEQHGQLI DLVQSHALPL
FNQLMAHTSS RLILSDREGY VLSHWGVDKY SDRLANVALD IGVNWQEEHK GTNAIGTALT
ARQAVSVVGD QHFIRQHRFM SCTACPIFSP SGEMIAAIDI TSEQQRHTQQ TLLLVSSLAQ
QVETALLCHL PDSHYRINLA SQPSLINSGW QGILVADNDG KILGCNPMAK QLLGSARVGD
AIDQHLGRDW SHNERIQKHE NLHLQTQPLK PARIGVGQSR SRSNRPVSQL GVKFREPKLE
RAWQHANKVL SKNIPLLITG ETGVGKDQFV KQLHAQSRRR EQPIVAVNCA ALPDNLVESE
LFGYHSGAFT GANRAGYIGK IRQADGGFLF LDEIGEMSLG AQSRLLRVLQ EREVIPVGSN
NVYKVDIQVI GATHTDLKQR VADGLFRQDL YYRLNGLQIR LPPLRQRSDI ERIIQKLHNK
HKAHEQNLCG RLLSQLCHYQ WPGNLRELDN FMQVASIMAE GESELNWSAL PDELQTQLMD
GKAIPPTDSK PMELSDTVDA NVVAAYRRFE GNVSQSAKHL GVSRNTLYRK LKRLGLKS
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