| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0262 |
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| Symbol | |
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| ID | 5613205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 296434 |
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| End bp | 297876 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931088 |
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| Product | peptidase M16 domain-containing protein |
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| Protein accession | YP_001472003 |
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| Protein GI | 157373403 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0612] Predicted Zn-dependent peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000120782 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.152415 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACCT TAACTCATCT ATCAAAAAGC TCGAACAGAC TTATTGCTGC CATCTTTATC
ACAGGCATGA GCTTGTCCGG TTGTGCCACT CAGACTGTAT CGACACCGGT AGATACCGGT
AGCTTTAGTA TGCCGGCCTA TGAGCAGTTT AAGCTTGAAA ATGGTTTAAC TGTCTATTTA
ATGCCGCAAA AAGAGGTACC ACTAATCACG GTAAACGCGG TGGTTCGCGC CGGGGCCGTG
AATGATACGA CCTCGGGTGT CGCTGGAATG ACGGCTCAAA GCTTACTCTT GGGAGCCGAT
GGTAAGTCGA AAAGTGAAAT CGAACAGATG GTCGATTTTC TCGGTGCGTC TATCTATGCC
GATGCGGGAA AAGAGGGGAG CTACATAGGT GCTGATTTTA TGGCTAAAGA TAGCGATAAG
ATCTTGCCCC TGATCCAGAG TTTACTCCTG TCACCGGATT TCGATGCCGC CGAGTTCGAT
AAGCTACGTC AACGGGAGAT TGCCGGACTA TCTCAGGCGA AAGAGAGCCC TCGCGCCGTT
ATCAGCCGCT ACTTCGACAA ACTAATTTAT GGTTCACATC CATATGGTAA CGCCTCATCG
GGTAATAGTG TCTCATTAGC TGAGCTCAAT ATCTCGCAAT TAAGAGCGTT TCATCAGAGT
TATTATCAGC CAGCTAACAC AGCGATAAGT GTTGTCGGTG ACTTCGACGT TAAGCAGATG
AAATCTACTA TGAAGCAGTT GTTTGGTCGT TGGAAGAATA GTGAAGAGGT TGTCACACCT
GCACTAAAAT CCAATCAACC CGAGCTGACA AAAAGTCAGG TACTGTTAGT CGATAAGGGT
GATGCAATCG AAACTACCTT CCTTATCGGC GGTAAAGGGA TCTCCCGTGA CAACCCGGAT
TATGTCGGCT TGAAGGTGAT TAATACCATC CTTGGAGGAC GCTTTACGTC ATGGTTGAAT
GATGAACTAA GGGTTAATGC CGGATTGACC TATGGAGCTC GTTCCGGGTT TATTCCCTAT
TCTGAAGGCG GCATATTCAG GATCAGCACC TTCACTAAAA CTGAGACGAC CAAAGAGACC
ATAGATCTGG CCTTGAAAAC CTATGCACGA CTCTGGGAGA CAGGAGTCGA CCAGAAGACA
TTAGATTCAG CTAAGGCCTA TGTGAAGGGG CAGTTCCCGC CAAAGTTTGA AACCAGTGGT
AAGCTTGCAG GGCTGTTATC TGACATGTAC CTGTATGGTT TCGATGATGC GTTTATCAAT
GACTTTCAAT CGAAAGTTGA TGGCCTGACT CTGACCGAGG CCCAGAGGTT GGTTAGCACC
TACTTCCCTC AGGATAACCT GCAATTTGTG CTTATTGGTA ACGCAGACAA GATAGCGCCG
ATTGCTGCCG AGTATGGTGA TGTGACCCGG ATTGGGATTA AAGCTGTAGG ATTTGGAGGA
TAA
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| Protein sequence | MKTLTHLSKS SNRLIAAIFI TGMSLSGCAT QTVSTPVDTG SFSMPAYEQF KLENGLTVYL
MPQKEVPLIT VNAVVRAGAV NDTTSGVAGM TAQSLLLGAD GKSKSEIEQM VDFLGASIYA
DAGKEGSYIG ADFMAKDSDK ILPLIQSLLL SPDFDAAEFD KLRQREIAGL SQAKESPRAV
ISRYFDKLIY GSHPYGNASS GNSVSLAELN ISQLRAFHQS YYQPANTAIS VVGDFDVKQM
KSTMKQLFGR WKNSEEVVTP ALKSNQPELT KSQVLLVDKG DAIETTFLIG GKGISRDNPD
YVGLKVINTI LGGRFTSWLN DELRVNAGLT YGARSGFIPY SEGGIFRIST FTKTETTKET
IDLALKTYAR LWETGVDQKT LDSAKAYVKG QFPPKFETSG KLAGLLSDMY LYGFDDAFIN
DFQSKVDGLT LTEAQRLVST YFPQDNLQFV LIGNADKIAP IAAEYGDVTR IGIKAVGFGG
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