| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0168 |
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| Symbol | ompR |
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| ID | 5609881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 190672 |
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| End bp | 191397 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640930994 |
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| Product | osmolarity response regulator |
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| Protein accession | YP_001471909 |
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| Protein GI | 157373309 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGACAGG AAACCTCTAA AATTCTCGTC GTCGATGATG ATATGAGGCT AAGAGCTTTA
CTAGAGCGCT ATCTTATGGA GCAAGGTTAT CAGGTTCGTA GTGCGGCCAA TTCTGAGCAG
ATGGATCGAC TGCTGGAACG TGAAAACTTT CACCTTCTTG TACTCGACCT GATGCTTCCC
GGTGAAGATG GCTTATCTAT CTGCAGAAGA CTCCGTCAGA CAGGTAATCC CATTCCTATT
GTTATGCTTA CAGCCAAAGG GGATGAGGTC GACCGTATCA TTGGCCTCGA GCTTGGAGCC
GACGACTACC TGCCTAAACC ATTTAACCCT CGTGAGTTAC TGGCCAGAAT TAAAGCCGTG
ATGCGCAGAC AGAGTCAGGA TGTTCCGGGG GCGCCGACTC AGCAGGAGGA GGAGATCACT
TTTGGTGAGT TTGCACTCAA TCTGGCTACC CGTGAGATGT ACCACGGCGA GGAAGCTATT
TCACTCACCA GTGGTGAATT TGCCGTACTA AAGGTATTGG TGAGTCATCC CCGTGAACCG
CTATCGCGTG ATAAGTTAAT GAACTTAGCT CGCGGCCGTG ACTACTCTGC ACTCGAACGT
TCTATCGATG TTCAGGTTTC CCGTTTACGA CGCCTGATAG AGAAAGATCC GGCAAATCCA
AGATATATTC AAACCGTGTG GGGTCTTGGG TATGTGTTTG TACCCGATGG TGCCGCCCGA
CGATGA
|
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| Protein sequence | MGQETSKILV VDDDMRLRAL LERYLMEQGY QVRSAANSEQ MDRLLERENF HLLVLDLMLP
GEDGLSICRR LRQTGNPIPI VMLTAKGDEV DRIIGLELGA DDYLPKPFNP RELLARIKAV
MRRQSQDVPG APTQQEEEIT FGEFALNLAT REMYHGEEAI SLTSGEFAVL KVLVSHPREP
LSRDKLMNLA RGRDYSALER SIDVQVSRLR RLIEKDPANP RYIQTVWGLG YVFVPDGAAR
R
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