Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0153 |
Symbol | |
ID | 5611133 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 172513 |
End bp | 175665 |
Gene Length | 3153 bp |
Protein Length | 1050 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640930979 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001471894 |
Protein GI | 157373294 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACGTT TCTTTATCGA TCGCCCTATC TTCGCCTGGG TGATCGCCAT TATTGTGATG CTGGCTGGGG TGTTATCTAT CCTGGGTCTA CCAGTGTCGC AATATCCGAG TATCGCACCG CCATCGGTTG AGATTAGGGC TGTGTATCCG GGAGCATCGG CTAAAACGAT GGAAGATTCG GTAACTCAGG TTATCGAGCA GCGAATGACA GGGATTGACC ACCTTCGCTA CATCTCATCA ACCAGTGATA GTTTCGGTAA CGCGACCATC ACTTTAACCT TTAATGCCGA GGCCGATCCG GATATTGCTC AGGTACAGGT GCAAAACAAG CTTCAGCTTG CAATGCCACT GCTTCCGCAA GAAGTTCAGG CTCAGGGTGT TAACGTCGCT AAGTCGAGTG CTGGCTTCCT GATGGTTGTG GGCTTCGTAT CTCAGGATGG CTCACTGGAT AAGAATGATA TCGCTGACTA TGTGGGCTCT AACGTTCAAG ACCCGATGAG TCGTGTACCT GGTGTGGGGA CGATTCAGTT GTTCGGTGCC CAGTATGCGA TGCGTATCTG GCTCGACCCA CTGAAACTGA CTCAATACAA CTTGACCAGT CAAGATATTA TCGCTTCTAT CAGGGAGCAA AATGCGCAGG TTTCTGCTGG ACAACTAGGT GGGGCGCCGT CGGTTTCCGG CCAGCAGCTG AACGCAACGG TATCGGCACA GAGTCGTCTG CAGACGGCCG AACAGTTTAA GAAGATCATC ATCAAGGCTG ATTCGACCGG TGCCAAAGTG TTCCTCGAAG ATGTTGCGCG TGTCGAGTTA GGTGCTGAGA ACTATGATGT AGAGTCTTAC TATAATGGTA AGCCTGCTGC GGGCATCGGT ATTCAGTTGG CGACAGGTGC TAACGCACTT GCTACGGCCG AAGGGGTTCG CGCCAAGATT GCCGAATTGC AGCCATTCTT CCCGCAAGGG TTAGAGGTGG TTTATCCCTA CGATACGACG CCATTTGTTG AGAAATCGAT CGAAGGGGTT GTGCATACCC TGCTCGAAGC TGTGGTCTTG GTTTTCTTGA TCATGTATCT GTTCCTGCAG AACTTCCGCG CAACGCTTAT TCCAACGATT GCGGTGCCGG TTGTACTCTT AGGTACGTTT GCGATCTTGT CGGCTGCCGG CTTCTCGATT AATACCTTAA CCATGTTTGC CATGGTACTG GCCATTGGCC TGTTGGTCGA TGATGCCATC GTTGTCGTAG AGAACGTCGA GCGAGTGATG TCCGAAGAGG GACTCAGTCC CATCGAGGCC ACAAAGAAAT CGATGGATCA GATCACCGGG GCTCTTGTGG GTATCGGCCT GACGCTTTCA GCGGTATTCG TCCCTATGGC ATTTATGTCG GGGTCGACAG GTGTGATCTA CAGGCAGTTT TCGATAACGA TTGTGTCGGC GATGGCGCTA TCTGTGATGG TTGCGATCAT CCTGACTCCA GCCTTGTGTG CCACCATGCT CAAGCCCATT GCTAAGGGGC ACCACGCGGT AGATACCGGC TTCTTCGGTT GGTTTAACCG TAAGTTTGAT GCATTGACCT CACGTTATGA GGCAAGTGTT GCTGCCATGA TCAAGCGTGC AGGTCGCACC ATGATGGTTT ATCTGGCTAT TACGGTCGCA GTGGGTTGGA TCTTCATGCG TATGCCAACT GCCTTCCTGC CCGATGAAGA TCAGGGGATC TTGTTTACTC AGGCTATCTT GCCGGTGAAC TCGACTCAGG AAGAGACGAA GAAAGTCCTG TCAGATGTGT CGGACTTCTA CCTGGAACAG GAAGGCGATA ACGTTAAATC AGTATTTAGC GTATCGGGCT TTAGTTTCGC CGGTAACGGT CAAAACATGG GTATTGCCTT CGTAGGCTTG AAAGATTGGT CCGAGCGAAC CGATCCAGGC CAAGATGTAC AATCGGTCGC TGGGCGTGCC ATGGGCATGT TTATGCAGAT GAAAGAAGCC TTCGTGTTTG CCTTTGTACC GCCGGCGGTT ATCGAACTGG GCACCGCTAA CGGTTTTGAT TTCTATCTGC AGGACAGGAA CGGCCAAGGA CACGATAAAC TGGTCGAAGC ACGAAATATG TTGTTAGGCA TGGCTGCACA AAACCCTAAC CTTGTGGGCG TACGTCCAAA TGGTCAGGAA GATGCGCCCA TGTATCAGAT CCATATCGAT CACGGCAAAC TCAGAGCCTT GAGTGTCGAT ATCGATGCGG TGAACAGCGT GCTGGGTACG GCTTGGGGCG GTAATTACGT CAACGACTTT ATCGACCGTG GTCGAGTGAA GAAGGTCTAC GTCCAAGGAG AGGCGGATTA CCGCATGCAG CCTGAAGATA TCGACTCCTG GTATGTTCGA AACACTAAGG GAGATATGGT GCCATTCTCT GCCTTTGCTA CAGGCTCGTG GGAATATGGT TCACCGCGTC TGGAGCGTTT CAACGGACTA CCCGCGATGA ATATCCAAGG TGGCGTAGCG CCAGGTTTCA GTACCGGTGA AGCGATGAAC ATCATCGAAG ATATGGTTAA GCAGTTGCCA CCTGGATTTG GTGTCGAGTG GAACGGTCTC TCATATGAGG AGCGTCTATC CGGTAATCAG GCGCCAATGC TATATGCACT GTCTATTGTG GTGGTATTCC TGGTACTGGC AGCGCTGTAT GAGAGTTGGT CTGTACCATT CTCGGTTATT TTAGTTGTGC CGTTGGGTAT TATCGGTGCG TTGATTGCGA TGAATGGTCG TGGTCTACCT AACGACGTAT TCTTCCAGGT AGGTCTATTG ACTACGGTAG GTCTCGCGAC GAAGAACGCC ATCTTGATTG TAGAGTTCGC CAAAGAATAC TACGAGAAAG GTGCGGGATT GGTTGAAGCA ACGCTGCACG CAGTCCGCGT TCGTTTGCGT CCAATCTTGA TGACATCGCT TGCATTTGGT CTTGGTGTTG TACCGCTAGC GATTAGTAGC GGTGTAGGTT CAGGAAGTCA AAATGCTATC GGTACTGCGG TATTGGGCGG CATGATGAGC TCGACCTTTA TGGGGATCTT CTTTATCCCA ATCTTCTTCG TGATTGTTGA ACGTATCTTC AGCAAACGTG AGAAGAAAGG GGCAAAGCTC GAGACTAAGG CGGAAACACC AGCAGCAGAA TAG
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Protein sequence | MARFFIDRPI FAWVIAIIVM LAGVLSILGL PVSQYPSIAP PSVEIRAVYP GASAKTMEDS VTQVIEQRMT GIDHLRYISS TSDSFGNATI TLTFNAEADP DIAQVQVQNK LQLAMPLLPQ EVQAQGVNVA KSSAGFLMVV GFVSQDGSLD KNDIADYVGS NVQDPMSRVP GVGTIQLFGA QYAMRIWLDP LKLTQYNLTS QDIIASIREQ NAQVSAGQLG GAPSVSGQQL NATVSAQSRL QTAEQFKKII IKADSTGAKV FLEDVARVEL GAENYDVESY YNGKPAAGIG IQLATGANAL ATAEGVRAKI AELQPFFPQG LEVVYPYDTT PFVEKSIEGV VHTLLEAVVL VFLIMYLFLQ NFRATLIPTI AVPVVLLGTF AILSAAGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM SEEGLSPIEA TKKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL SVMVAIILTP ALCATMLKPI AKGHHAVDTG FFGWFNRKFD ALTSRYEASV AAMIKRAGRT MMVYLAITVA VGWIFMRMPT AFLPDEDQGI LFTQAILPVN STQEETKKVL SDVSDFYLEQ EGDNVKSVFS VSGFSFAGNG QNMGIAFVGL KDWSERTDPG QDVQSVAGRA MGMFMQMKEA FVFAFVPPAV IELGTANGFD FYLQDRNGQG HDKLVEARNM LLGMAAQNPN LVGVRPNGQE DAPMYQIHID HGKLRALSVD IDAVNSVLGT AWGGNYVNDF IDRGRVKKVY VQGEADYRMQ PEDIDSWYVR NTKGDMVPFS AFATGSWEYG SPRLERFNGL PAMNIQGGVA PGFSTGEAMN IIEDMVKQLP PGFGVEWNGL SYEERLSGNQ APMLYALSIV VVFLVLAALY ESWSVPFSVI LVVPLGIIGA LIAMNGRGLP NDVFFQVGLL TTVGLATKNA ILIVEFAKEY YEKGAGLVEA TLHAVRVRLR PILMTSLAFG LGVVPLAISS GVGSGSQNAI GTAVLGGMMS STFMGIFFIP IFFVIVERIF SKREKKGAKL ETKAETPAAE
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