Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0117 |
Symbol | |
ID | 5612418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 130893 |
End bp | 131714 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640930943 |
Product | formamidopyrimidine-DNA glycosylase |
Protein accession | YP_001471858 |
Protein GI | 157373258 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00226258 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATGC CTGAATTGCC CGAAGTAGAA GTTACCCGTC AGGGGATCAC TCCTCATTTA GTCGATCAAC AAGCGACGGC ACTCACTGTG CGTAACGCCA GCCTTCGCTG GCCGGTACCG GATATCGCAC AGCAGATCGT AGGGGAGACC ATTCGAAACG TGCGTCGTAG GGCGAAGTAC CTGCTTATCG ATACCGATGC CGGCACGACA ATTGTGCATC TTGGCATGTC GGGAAGTCTG AGAATCGTCT CCAGGAACAC GCCTGTCGAG AAGCATGATC ATATCGATTT AGAGCTGGCC AGTGGCAAAA TACTGAGATT TAACGACCCA CGCCGCTTCG GTGCCTGGCT ATGGTGTGAA CTGCCCGAAG AGGCGCATCC ACTGCTGTCA AAGCTCGGAC CTGAGCCGCT AAAAGACGGC TTTAATCCCA CCTATCTTGA ACAGATATTA AAAAATAAGA AGAAAGCCAT TAAGCTCTGT TTGATGGATA ACCATATTGT TGTGGGTGTC GGTAATATCT ATGCCAACGA AGCCCTGTTT GCGGCAGGCA TTCATCCCGA AACGCAGGCG GGCAATGTCG ACACCGAGAG GTTGACGATT CTGGTTACCG AGGTAAAACA GATCTTAGCG AACGCCATCA AGCAGGGAGG GACCACATTG AAAGACTTCA CCAATGCCGA AGGAAAGCCT GGATACTTTG CCCAGAAGCT GCATGTTTAC GGGCGAGGCG GTGAGACCTG CACCCAATGT GGCAATCTGC TCAGCGAGAT CAAGCTGGGC CAGAGGGCCA CAGTATTTTG TGGCCTATGT CAGACTAAAT GA
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Protein sequence | MNMPELPEVE VTRQGITPHL VDQQATALTV RNASLRWPVP DIAQQIVGET IRNVRRRAKY LLIDTDAGTT IVHLGMSGSL RIVSRNTPVE KHDHIDLELA SGKILRFNDP RRFGAWLWCE LPEEAHPLLS KLGPEPLKDG FNPTYLEQIL KNKKKAIKLC LMDNHIVVGV GNIYANEALF AAGIHPETQA GNVDTERLTI LVTEVKQILA NAIKQGGTTL KDFTNAEGKP GYFAQKLHVY GRGGETCTQC GNLLSEIKLG QRATVFCGLC QTK
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