Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0066 |
Symbol | flgE |
ID | 5610626 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 77047 |
End bp | 78243 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640930892 |
Product | flagellar hook protein FlgE |
Protein accession | YP_001471807 |
Protein GI | 157373207 |
COG category | [N] Cell motility |
COG ID | [COG1749] Flagellar hook protein FlgE |
TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTTCA ATATCGCATT AAGCGGATTA CAAGCCACAA CACAAGATCT CAATACCATC AGTAACAATA TCGCCAACTC CTCCACCGTT GGATATCGTG GTGGTCGCAG TGAATTTTCG GCAGTCTACA ACGGCGGTCA GGCCGGCGGT GTCAACGTCA TGTCCACCAG CCAAAACTTC TCAATGGGTG GCAGCCTGGT CTATACCGGC CGTGAGCTGG ATATGGGAAT TCAGGGTGAT GGCTTCTTCG TGCTTAGCGG ACAAGATGGC AGCACGCTGT ACTCCAGAGC GGGCATGTTT TCACAAGATG CCGACGGCTA TATTACCGAT CCCGCCGGCA ACCGTCTGCA GGGTTACCCG GTTGGGGCTG GCGGGCAACT GCAAACCGGC AATGTGAGTG ATCTCCAGGT GCAGTCCGGT TCCCTCCCCG CTAAAGCCAC CACAGATGTG GGGGTTGTCT CAAATTTAGA TGCCAGCATG GAACCGATAG ACCAGACCAC CACCCCGTTC GACCCGGATG ATATCTCCAG CTACCACTCA TCTGGCACCG TCGCCGTCTA TGACTCCCTG GGCAACGAAC ATGCTCTGAC CCAATATTAT GTCAAAACCA ACGATAGCCC AAGCGAGTGG AATGTCCACT ACATGATGGA TGGCAAAGAT GTTGGAACCA ACAAACTTGA ATTCGATGAT AAGGGCGCAC TCACCGGTGG TGAAAATGTC ACATTAAACT TAGGAACCCC TGGCGGGGCT GCCCCCATGA GCCTGGATCT GAGCTACAAG AACAGCACTC AGTACGCCTC CGACTACAGC AATTCAAGCC TGACTCAAAA TGGCTACACC TCGGGTGAGT TAAACGGAGT GCGCTTAGAC GATAACGGCA TGGTCTACGG CACCTACACT AACGGTCAGG AGCAGATCCA GGGCCAGGTC GTATTGGCCG ACTTCAATAA CCCTAATGGT CTTACGCCCG TAAGCAACAA TGCCTGGGCA GCGACGAACG CTGCAGGACA ACCGATCGTA GGCGCACCGA CAACCGGCAC ATTAGGCTCG GTCAGTGGCG GTTACCTCGA GGGTTCTAAT GTCGATACCA CGGCAGAGAT GGTCAGTCTG ATGACGGCAC AGCGCAACTA TCAATCGAAC GCCAAGGTGC TGGATGCCAA CTCAACCATG CAGCAAGCCC TGCTGAACGC CATCTAA
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Protein sequence | MSFNIALSGL QATTQDLNTI SNNIANSSTV GYRGGRSEFS AVYNGGQAGG VNVMSTSQNF SMGGSLVYTG RELDMGIQGD GFFVLSGQDG STLYSRAGMF SQDADGYITD PAGNRLQGYP VGAGGQLQTG NVSDLQVQSG SLPAKATTDV GVVSNLDASM EPIDQTTTPF DPDDISSYHS SGTVAVYDSL GNEHALTQYY VKTNDSPSEW NVHYMMDGKD VGTNKLEFDD KGALTGGENV TLNLGTPGGA APMSLDLSYK NSTQYASDYS NSSLTQNGYT SGELNGVRLD DNGMVYGTYT NGQEQIQGQV VLADFNNPNG LTPVSNNAWA ATNAAGQPIV GAPTTGTLGS VSGGYLEGSN VDTTAEMVSL MTAQRNYQSN AKVLDANSTM QQALLNAI
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