Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0050 |
Symbol | |
ID | 5612893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 62608 |
End bp | 63465 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640930876 |
Product | MotA/TolQ/ExbB proton channel |
Protein accession | YP_001471791 |
Protein GI | 157373191 |
COG category | [N] Cell motility |
COG ID | [COG1291] Flagellar motor component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTAAAT TATTAGGATT ATTAATTATT CTACTATCGG TATTTGGTGG TTATGTTTGG GCTGGCGGAA ATTTAAGTTC ATTATGGCAA CCTGCTGAAA TATTAATAAT CTTCGGTGCA GGTGTCGGCT CTCTTATCAT TGCCAATCCT AAAGCGGTAC TTGCCGATAT GTATGCTCAG TTACGTGAAC TGCTTTCAGT CGAAAAGGAA GATCCTGAAC TCTATCCCCA GCTCTTTGGA CTAATGGGAA TGTTAATGAG CCAAATCCAG TCACAGGGGC TGAGAGTACT CGATGAGCAC GTAGAAAAGC CCAGAGAAAG CTCACTCTTT CTCATGTATC CAACGGTACT CGAACATCCC AATGTGCTGC AATTTTTAAT CGATAATCTA CGACTTCAGT CCATAGGCAA AATATCTCCA CACGATCTGG AACATATCTT AGAGGAGGAG ATCTACCGAA TAGAGGAAGA CAGGCTAAGA CCAGCTCACG CCTTAGGCAG GATTGCTGAA GCGATGCCTG GCTTCGGTAT CTTAGCCGCA GTCATGGGGA TCATCATAAC GATGTCCAAC ATCGATGGAC CTATCACTAT GATAGGGGTG AAAGTAGCAG CAGCGCTGGT AGGCACCTTT ATCGGAATTT TTGCCTGCTA CTGTCTATTT GAACCAACAT CTAAGGCCCT GGAGCATTTA GTTGAACGCA AGTCAGCCCA GCTTCGCTGT GTTGCCGCCA TGCTTACCGC ATTTGCCAAA GGCAAGCCTC CCATGATTGC CATAGACGCC GGTAGAAAAC AGATCCAAAG CGAAAACCGC CCCACATTTA TCGAGCTTGA ACGTTGGATG GTGGAGCAAA AGAGCTGA
|
Protein sequence | MSKLLGLLII LLSVFGGYVW AGGNLSSLWQ PAEILIIFGA GVGSLIIANP KAVLADMYAQ LRELLSVEKE DPELYPQLFG LMGMLMSQIQ SQGLRVLDEH VEKPRESSLF LMYPTVLEHP NVLQFLIDNL RLQSIGKISP HDLEHILEEE IYRIEEDRLR PAHALGRIAE AMPGFGILAA VMGIIITMSN IDGPITMIGV KVAAALVGTF IGIFACYCLF EPTSKALEHL VERKSAQLRC VAAMLTAFAK GKPPMIAIDA GRKQIQSENR PTFIELERWM VEQKS
|
| |