| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0044 |
|---|
| Symbol | |
|---|
| ID | 5612498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 50517 |
|---|
| End bp | 50795 |
|---|
| Gene Length | 279 bp |
|---|
| Protein Length | 92 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640930867 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001471785 |
|---|
| Protein GI | 157373185 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000282672 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.843809 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGA ATATTTTGTT TCCCGATCTG CAAGATTGGG ATGAGAAAAC GCAATCAGTG
GTATTTCCGG CTCAGGTACA AGGTGCGAAT ATTGAATGTC GTATAGGGTT GTCTAAGCTA
TCCGAAATGG CATTAACGCT CTTAAAAAGT ACCGACAGCG ATATCAAAGA GAAAGCATTA
AACTTGTTTG AAGAATATAG GTTCGATATT GAAGAGGAGG TTGAAACACT CATCGAATTG
GAGTCATTCG ATGAGCAGGG TCGGCTTGTA GTAAAGTAA
|
|---|
| Protein sequence | MNQNILFPDL QDWDEKTQSV VFPAQVQGAN IECRIGLSKL SEMALTLLKS TDSDIKEKAL
NLFEEYRFDI EEEVETLIEL ESFDEQGRLV VK
|
|---|
| |