Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0034 |
Symbol | |
ID | 5613592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 40788 |
End bp | 41777 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640930857 |
Product | methionyl-tRNA formyltransferase |
Protein accession | YP_001471775 |
Protein GI | 157373175 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0223] Methionyl-tRNA formyltransferase |
TIGRFAM ID | [TIGR00460] methionyl-tRNA formyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0590691 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAACCAT TAAACATTAT TTTTGCTGGT ACTCCAGATT TTGCGGCTCG CCATCTGCAA GCCCTCATCG ATTCAGAACA CAATATTATC GGTGTTTATT CACAACCGGA TAGGCCGGCT GGACGAGGAA AGAAACTGCA GGCGAGTCCG GTAAAAAGTC TGGCCATCGA GCATAACCTT CCCGTCTTTC AGCCAAAGTC ACTTCGTGAT GAACAGGCTC AAGCAGAACT TGCCAACCTG AATGCCGATA TCATGGTTGT TGTCGCCTAC GGGCTTATCT TGCCAAAAGT CGTGCTCGAC ACCCCTAAAC TTGGCTGTAT CAATGTGCAC GGCTCAATAT TGCCTCGCTG GCGTGGTGCG GCGCCAATCC AACGCGCCCT TTGGGCTGGT GACACAGAAA CAGGCGTCAC CATCATGCAG ATGGATATCG GTCTGGATAC CGGCGATATG TTATTGAAGA CCCGGTTACC GATTGAAGAT AACGATACTT CGGCGAGCCT CTATGAAAAA CTGGCTTTAC AGGGGCCTGA TGCCCTCATT GAGGCGCTTA CCGGGTTAGC TAAAGGTGAG TTAACGGCAG AGAAACAGGA TGAAAGCCTG GCTAATTACG CAGAAAAGCT CAGCAAAGAG GAGGCTGAGC TTGACTGGAG TAAATCGGCG CTCGAACTGT GGCGTGAGAT CAGAGCCTTT AATCCATGGC CTATAAGCCA CTTTACTCAC CAGGATGCCA GTATCAAAGT AAGAGAATCT GCGGTCAGCA ACCTCAGCAG TGATGCACCA GCAGGTACCA TTATATCGGC GGGTAAACAG GGTATAGATA TTGCCACTGG TGACGGCGTG TTAACTCTGC TTAATATGCA GTTGCCGGGC AAGAAGCCAT TGAGTGTCGG CGACATTTTG AATTCTCGTG GGGAGTGGTT TACTCCAGGC ACACTCTTAA ATAGTAAAAA GCTGATTGGC AAAGAGCCAG CGGTAAAAGA GGCTGAGTAA
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Protein sequence | MKPLNIIFAG TPDFAARHLQ ALIDSEHNII GVYSQPDRPA GRGKKLQASP VKSLAIEHNL PVFQPKSLRD EQAQAELANL NADIMVVVAY GLILPKVVLD TPKLGCINVH GSILPRWRGA APIQRALWAG DTETGVTIMQ MDIGLDTGDM LLKTRLPIED NDTSASLYEK LALQGPDALI EALTGLAKGE LTAEKQDESL ANYAEKLSKE EAELDWSKSA LELWREIRAF NPWPISHFTH QDASIKVRES AVSNLSSDAP AGTIISAGKQ GIDIATGDGV LTLLNMQLPG KKPLSVGDIL NSRGEWFTPG TLLNSKKLIG KEPAVKEAE
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