| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0033 |
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| Symbol | |
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| ID | 5613591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 39506 |
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| End bp | 40786 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640930856 |
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| Product | sun protein |
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| Protein accession | YP_001471774 |
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| Protein GI | 157373174 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0617271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTGC GAGCATTAGC GGCCAAGGTC GTATTTCAGG TGTTGGAAAA AGGGATTTCA
TTGTCTGTCG CCCTGCCGGA TCAGCAAAGA CACCTTGAAA GTGGTAAAGA TAAGGCTCTA
ATGGCCGAGC TCTGCTATGG CGTCATGCGC CACCTGCCTC AGCTTGATAA ATTGGTCAGT
GACTGCATGA GTAAACCACT GAAGGGCAAG CAAAGGATAC TGCATCAACT GTTACTCGTT
GGCTGCTATC AACTTTATTT CACCCGCATC CCGAGCCATG CAGCCATTTC AGAAACCGCC
GAAGCCTGCC GACAACTCAA ATTTGAAGGC CTGGTAAAAG TTGTCAACGG TGTACTGCGC
AATATTCAGC GTCAAGAGAA GCCACTGCCT ACAGATAACG AAACCTTAGC TCTCAATACT
CCGGCCTGGA TAATCAAGCG ACTCAAAGCG GCTTATCCGG AAAGCTGGAA AGAGATCGTT
GAGCAAAGCC ATCAACGTCC ACCTATGTGG CTACGCAGCA ATAAACTGTC GCAGACTCGC
GATGAGTACT TAGCCTCTCT TGCCGAAGTT GAGATCCAAG CTTCTGCAGG TAAGAGTAGC
GATGCCATCT TACTCGAGAG TCCTAAAGAT GTATTGCAAC TTCCCGGCTT TGAGGAAGGA
ACCGCCTCGG TTCAGGACGG TGCGGCTCAA TGGGCTGCAA CTCTACTGGC CCCAATCGAT
GGGGAATTAG TCCTCGATGC CTGTGCGGCA CCAGGCGGTA AGACTTGTCA CCTATTAGAA
CAAGCCCCCA ATATTGAATT AGTCGCCGTC GATTTTGATG CCAACCGTCT CGAACGAGTC
CAGCAAAACC TTGACCGTCT GTCGCTCAAC GCAAAACTGA TCCATGGCGA TGCCGCCGAT
ATCGATTCAT GGTGGCAAGG AGATAAGTTT GATCGCATCC TACTCGATGC CCCTTGCTCG
GCAACAGGTG TTATCCGTCG TCATCCCGAT ATCAAATGGC TAAGAAAACA AGCCGATATC
GAAGAGTTGG CCTCACTGCA GAGTAAGATA TTAGATCACT GTTGGCAGTG GCTCAAGCCC
GGTGGCACAC TGCTCTACGC GACTTGCTCA ATCCTTCCTC AGGAAAACGA ACAGCAGATC
CGTGCCTTCC TGGAGAGAGC CAATGACGCG ACTCTCGTTC CAATCGATGA GCAAAACCAC
CCCGATGATA TTGGATGGCA AATTACACCG GGATTGGAGA ATATGGATGG ATTTTACTAC
GCACGGTTGG TAAAGGGATA A
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| Protein sequence | MNLRALAAKV VFQVLEKGIS LSVALPDQQR HLESGKDKAL MAELCYGVMR HLPQLDKLVS
DCMSKPLKGK QRILHQLLLV GCYQLYFTRI PSHAAISETA EACRQLKFEG LVKVVNGVLR
NIQRQEKPLP TDNETLALNT PAWIIKRLKA AYPESWKEIV EQSHQRPPMW LRSNKLSQTR
DEYLASLAEV EIQASAGKSS DAILLESPKD VLQLPGFEEG TASVQDGAAQ WAATLLAPID
GELVLDACAA PGGKTCHLLE QAPNIELVAV DFDANRLERV QQNLDRLSLN AKLIHGDAAD
IDSWWQGDKF DRILLDAPCS ATGVIRRHPD IKWLRKQADI EELASLQSKI LDHCWQWLKP
GGTLLYATCS ILPQENEQQI RAFLERANDA TLVPIDEQNH PDDIGWQITP GLENMDGFYY
ARLVKG
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