Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0019 |
Symbol | |
ID | 5612851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 24405 |
End bp | 24845 |
Gene Length | 441 bp |
Protein Length | 146 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640930842 |
Product | hypothetical protein |
Protein accession | YP_001471760 |
Protein GI | 157373160 |
COG category | [S] Function unknown |
COG ID | [COG2258] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000110253 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGAAAC TTATAGGTAT CGGGTTTAAA CCAATCAAGC AAGGCCCTAT GACGTTAGTT GAGTCGGCTA ACGTCACCCA GACTCATGGT GTAGAGCAAG ATTTCTTTGG GCGTCCGGGT AAACGTCAGA TCACGGTAAT GTCCAAAGAC CAATGGCAAC TTGTTTGCGC CGAGCTCGAT TCACCGCTTC CCTGGACGAC CCGACGTGCA AACCTGTTGA TCGAAGGACA CTGTTTCTGT GCCGCAGATC AAGGTAAGTT ATTACGTATT GGCAAGCTGA CACTCGAGAT CACCGGCGAA ACCGATCCCT GTAAAAAAAT GGAAATAGCG CACGCAGGGC TCGAAGCGGC ACTGACTCCG GATTGGCGTG GCGGTGTGAC CTGCCGGGTA TTAAACGATG CCATAATCAA TAAAGGCGAT CTTGTTCAAC TGCTAAGCTA A
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Protein sequence | MKKLIGIGFK PIKQGPMTLV ESANVTQTHG VEQDFFGRPG KRQITVMSKD QWQLVCAELD SPLPWTTRRA NLLIEGHCFC AADQGKLLRI GKLTLEITGE TDPCKKMEIA HAGLEAALTP DWRGGVTCRV LNDAIINKGD LVQLLS
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