| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0016 |
|---|
| Symbol | |
|---|
| ID | 5609689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 18917 |
|---|
| End bp | 19507 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640930839 |
|---|
| Product | DNA-3-methyladenine glycosylase I |
|---|
| Protein accession | YP_001471757 |
|---|
| Protein GI | 157373157 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2818] 3-methyladenine DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00624] DNA-3-methyladenine glycosylase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000166004 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCATGG AAATGCAACG TTGTAGTTGG GTTGGGGCCG ATGACCTATA TCAGGCGTAT
CACGATAAGG TATGGGGGCG TCCCGTTTAT GATAGCCAGG AGCTGTTTGC TAAGCTCTGT
TTAGATGGTC AACAGGCGGG TCTATCTTGG ATCACTATCC TCAAGAAACA GCAAAATTAT
GAGGCCGCAT TCGCTAACTT CGATCCGGTG ATTATAGCGA AATTTGACGA TGAAAAAGTT
GAAGCGCTAC TTCAGGACAA AGGAATAGTG CGTAACAGGC TAAAGGTAAA CTCGATAATC
AAAAACGCCC GCGGCTATAT CAGCTATACA GAACAGGGGA ATGATTTTTC CGAATTTCTA
TGGAGCTTCG TCGGTGGGAC ACCCATAGTG AACACATTCA AGACTATGGC AGAGGTTCCT
GCGCAGACGC CAGAATCGGA GGAGATGTCT AAGGCATTGA AAAAGCTTGG GTTTAACTTT
GTCGGCCCCA CCATCTGTTA CGCATTTATG CAGGCCGTTG GCATGGTTAA CGATCATACA
ACAGATTGTT TTTGTTATGA TTTACATCTA GAAGGATCCG AGGGAGAATA A
|
|---|
| Protein sequence | MTMEMQRCSW VGADDLYQAY HDKVWGRPVY DSQELFAKLC LDGQQAGLSW ITILKKQQNY
EAAFANFDPV IIAKFDDEKV EALLQDKGIV RNRLKVNSII KNARGYISYT EQGNDFSEFL
WSFVGGTPIV NTFKTMAEVP AQTPESEEMS KALKKLGFNF VGPTICYAFM QAVGMVNDHT
TDCFCYDLHL EGSEGE
|
|---|
| |