| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3988 |
|---|
| Symbol | |
|---|
| ID | 5081471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4639658 |
|---|
| End bp | 4640692 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640501200 |
|---|
| Product | putative cytoplasmic protein |
|---|
| Protein accession | YP_001185490 |
|---|
| Protein GI | 146295066 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3943] Virulence protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATA ACATCCCACA AGCCCCTCAA GGCGAGTTTG TTCTTTTCAC CAGTGTTGAT
GGTCAAACTC GTGTCGAGTG TCGATTTGAA TCTGACACCT TGTGGCTTTC TCAGGCTGCA
ATGGCTGAGC TTTATGATAA AGATGTTCGC ACAATTAATG AGCATCTAAT CAATATCTAC
AACGAGGGTG AGCTTGTACA AAACGCAACT ATCCGGAAAT TCCGGTTAGT TCGATTGGAA
GGTACTCGCC AAGTATCTCG CGAGATTGAC CACTACAATC TCGATGCAAT TTTGTCTGTA
GGCTACAGGG TTCGTTCGCA ACGAGGTACA CAGTTCCGCC AATGGGCAAC GCAAATCCTG
AAAGAATACC TTATCAAGGG ATTTGCCATG GATGATGAGC GCCTGAAAAA TCCGCCCGTT
GGCCATTCTG CTGTGCCAGA TTACTTTGAT GAAATGCTGG AACGCATTCG CGATATCCGC
GCCAGTGAGC GTCGCGTTTA TCTGCGGGTG AAAGAAATCT TTACCATGGC TGCTGATTAC
GAGCCATCCA ACCAAGAGAC CAACCGCTTC TTTCAAACCA TCCAGAACAA GTTGCATTAT
GCCTGTACGA AAATGACTGC CGCTGAGCTT ATCGCCAACC GAGTGGACGC CAGTAAACCG
GATATGGGCT TAACCAGCTA TAAAGGCGAT GAAGTACGCA AGACAGACGT CACCATTGCC
AAGAACTATC TGCGTGAAGA CGAAATCAAA GAGCTTAATC GCATCGTCAA TATGTGGCTC
GACTTTGCCG AAGATCAAGC GCTGCGTCGC AAGCAGGTAT TCTTGCAGGA CTGGGCCGAT
AAGCTTGACC AGTTTTTAAG TTTTAATGAT CGGGACGTAC TAAGCGGAGC TGGAAAAATC
TCCAAGAAAG ACGCTGATGA TAAAGCGAAA TTGGAGTTTG ACCTCTTTGC CCAGCAGCGC
CGTCGTTTAA AAGAAGCCGA AGGCGCGCGG GCTAATATTG CAGCACTCAA GGCCATACTC
AAAAAAGATA AATAG
|
|---|
| Protein sequence | MTDNIPQAPQ GEFVLFTSVD GQTRVECRFE SDTLWLSQAA MAELYDKDVR TINEHLINIY
NEGELVQNAT IRKFRLVRLE GTRQVSREID HYNLDAILSV GYRVRSQRGT QFRQWATQIL
KEYLIKGFAM DDERLKNPPV GHSAVPDYFD EMLERIRDIR ASERRVYLRV KEIFTMAADY
EPSNQETNRF FQTIQNKLHY ACTKMTAAEL IANRVDASKP DMGLTSYKGD EVRKTDVTIA
KNYLREDEIK ELNRIVNMWL DFAEDQALRR KQVFLQDWAD KLDQFLSFND RDVLSGAGKI
SKKDADDKAK LEFDLFAQQR RRLKEAEGAR ANIAALKAIL KKDK
|
|---|
| |